Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00364 ATGACCTCCTTGGAGTCATATGAGAAAGAAACTAGTCTTGTGGGACATACTGGTCCACTTCAGAGCAAGAGAAACACACCCGTTGTGCAGATGAGTGGTCCACTATATGCTACCACTGGAAGTGGAAATCTTTTGCAGAAGCGTGTTGTTGTATCAGGAAACAAAGCAGAGGAGACAGAAACAGACAATTTTGCTACATTCCGCGAAACAGGTTCAAATTTCTGGAATAACGACTATGATAGAAAAAATGAACACTTACTGAGGTCTGGGCAACTGGGAATGTGCAATGATCCTTATTGTACTACTTGCCCTACTTACTTCAATGCTTCTCAGCAAAGAAATCCAAAACCTTCAACTAGATGGGATCCAAAGTTCCATAATGCTCTTTATGGGGATGCAAAGAGTTTTGTCAGAAAACTTCTTTCTTTCTGCTCTTCTTATGTTCTTGGAGTTAAGAACCCTCATGCCAAGGTTGTACAAAGATGGAACCAATTTTTGGCCATATTTTGCCTGATTGCTATTTTTGTGGACCCATTATTTTTCTTCTTACTCTATGTGGAGAAGGATAATAAATGTATTGTTATCAACTGGCCTATGACGAAAGCACTTGTTTCATTTAGATGTGTGAATGATTTTCTTTATTTCCTTAACATTCTTCTACAGTTTAGGTTAGCTTATGTTTCTCGTGAATCGAGGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCTCTTCATTACCTAAAGGGTTATTTCCTTATTGACTTATTTGTTGTATTTCCTCTTCCTCAGATAATGATATTGTTTGTCCTACCAAATTCTTTTGGGGGAGCAAATTATGCAAAGAATCTTCTGCGTGCAGCGATCTTAGTGCAATATATCCCCAAGTTATTCAGGTTTCTGCCGCTGCTAATTGGTCAATCTCCAACAGGATTCATATTTGAGTCAGCCTGGGCAAATTTCATTATAAATCTCCTCATTTTTATGCTTGCTAGTCATGTTGTTGGCTCTTGCTGGTACCTCTTTGGTCTACAGAGGGTTAATCAGTGTTTGCGGAATGCCTGCCATAGTTCTAATATAACTGGATGCATGAAATTCATTGATTGTGGACGTGGCCTTGGAAACAATCAGCCTAGCTTATCATATCAGTGGATGAATAATAGCGATGCTGTTGCTTGTTTGGATTCCTCTTCTGATGGTTTCTCTTATGGGATTTATGGGAGTGCTGTACCACTTACTATAGAAACTAACTTGGTCAACAAATATGTGTATTCTCTTTTTTGGGGATTCCAGCAAATCAGTACTCTAGCTGGTAATCTAGATCCTAGCTATTTTGTGTGGGAAGTGCTTTTTACCATGGCCATCATAGGAATGGGACTCTTGCTTTTTGCAATTCTGATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGGAGGAAGCTGGAAATGCAACTTAGAGGTCGTGACGTCGAGCAATGGATGAGCCATCGACGCTTACCAGAAGATCTAAGGAGGAGAGTTAGACAGGCTGAACGGTATAATTGGGCTGCAACAAGGGGTGTGAATGAAGAAATGCTTATGGAGAATTTGCCAGAAGATCTGCAGAGAGACATAAGACGTCATCTCTTCAAATTTGTGAAGAAAATTCGGATTTTTGCCCTGATGGATGAGCCTATCTTGGATGCCATTTGTGAGAGACTGAGACAAAAGACATACATTAAAGGAAGTAGAATTCTGAGTCAGGGTGGACTGGTCGAGAAGATGGTATTTGTGGTGCGTGGTAAATTGGAGAGCATTGGAGAAGATGGAACGAGAATTCCTCTATCTGAAGGGGATGCTTGCGGTGAAGAACTTCTGACATGGTATCTTGAACATTCTTCAGTTAGCACAGATGGTAGAAAAGTAAGGCTTCCAGGGCAGAGATTGGTCAGCAACAGGACAGTAAGGTGCTTAACAAATGTGGAGTCATTTTCACTCTCTGCTTCAGACCTTGAAGAAGTCACAATCCTTTTCACAAGATTCTTGCGGAGTCCATGCGTTCAAGGAGCCCTAAGGTATGAGTCACCTTATTGGAGATCCCTTGCTGCGACCCGCATTCAAGTTGCATGGAGATACAGGAAGAAACGTCTAAGTCGTCTCAATTCCTCACCATCAGATTAA 2172 0.4107 MTSLESYEKETSLVGHTGPLQSKRNTPVVQMSGPLYATTGSGNLLQKRVVVSGNKAEETETDNFATFRETGSNFWNNDYDRKNEHLLRSGQLGMCNDPYCTTCPTYFNASQQRNPKPSTRWDPKFHNALYGDAKSFVRKLLSFCSSYVLGVKNPHAKVVQRWNQFLAIFCLIAIFVDPLFFFLLYVEKDNKCIVINWPMTKALVSFRCVNDFLYFLNILLQFRLAYVSRESRVVGAGDLVDHPKKIALHYLKGYFLIDLFVVFPLPQIMILFVLPNSFGGANYAKNLLRAAILVQYIPKLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLASHVVGSCWYLFGLQRVNQCLRNACHSSNITGCMKFIDCGRGLGNNQPSLSYQWMNNSDAVACLDSSSDGFSYGIYGSAVPLTIETNLVNKYVYSLFWGFQQISTLAGNLDPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQALGRRKLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYNWAATRGVNEEMLMENLPEDLQRDIRRHLFKFVKKIRIFALMDEPILDAICERLRQKTYIKGSRILSQGGLVEKMVFVVRGKLESIGEDGTRIPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLVSNRTVRCLTNVESFSLSASDLEEVTILFTRFLRSPCVQGALRYESPYWRSLAATRIQVAWRYRKKRLSRLNSSPSD 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00364 723 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 8 720 - -
Cca08g00364 723 Gene3D - 165 480 - -
Cca08g00364 723 CDD CAP_ED 555 671 IPR000595 -
Cca08g00364 723 SMART cnmp_10 555 690 IPR000595 -
Cca08g00364 723 Gene3D Jelly Rolls 553 677 IPR014710 -
Cca08g00364 723 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 720 - -
Cca08g00364 723 SUPERFAMILY Voltage-gated potassium channels 157 483 - -
Cca08g00364 723 ProSiteProfiles cAMP/cGMP binding motif profile. 555 623 IPR000595 -
Cca08g00364 723 SUPERFAMILY cAMP-binding domain-like 483 675 IPR018490 -
Cca08g00364 723 MobiDBLite consensus disorder prediction 1 34 - -
Cca08g00364 723 Pfam Ion transport protein 164 482 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca08g00364 723 Gene3D Helix hairpin bin 482 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00364 Cca-Chr8 5503262 5512317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00364 2 633 Ion Channels AT3G17700 63.323 0.0 799
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00364 K05391 - gmx:100795427 1372.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00364 08 5503262 5512317 Cca08g00364 08 5503262 5512317 ECH