Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00363 ATGCTTGTTGTACTTAGAAGCATAAATGATTTCATACACTTTCTAAACATTGTTCTTCAGTTTAGGTTGGCTTATGTGGCTCCTGAGTCTAGGGTGGTTGGTGCCGGGGAGTTAGTTGACCATCCTAAGAAAATAGCTTTTCACTACTTTCGGACATCTTTTATTATTGACTTATTTGTTGTACTTCCACTTCCTCAGATATTCATAGTGTTTGTCCTACCAAAGCACTTGGAAACGGGGTCAACAGGAGCAAACTATTCAAAGAATCTTTTGCGTAATGTGATCCTTGTTCAGTATATTCCCAGACTGTGTAGGTTTCTTCCTATGCTAATTTCTCCAAGTGGATTCATATTTGAGTCTCCATGGGCAAGTTTCTTTATAAATCTTTTTACCTTTATGCTATCTGGCCACTTTGTTGGGTCCTGGTGGTACCTCTTTGGTTTGCAGAGGGTTAATATGTGTCTACGACGAGCCTGCAAGATAACAAATATCAGTGAATGTACAAAATTCATTGATTGTGGGCATGGACAAACAGCAGATTATCAAAATAAAACAAATTGGCTTAAATGGAAGAACAGTTCTGTTGCAAGTGCTTGTTTTACTGAAGATGGTTTTGAGTACGGTATCTATCTTAAAGCTGTCAACCTTACTGCAAATCATAATGTGATCAATAGATATGTATATTCATCATTTTGGGGATTCCAGCAAATTAGTACACTGGCTGGCAATTTAATCCCTAGTTATGATGTTTGTGAAGTTCTTTTTACAATGGCCATTATAGGATCGGGACTGTTGCTGTTTGCTCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGCAGGAGGCTAGAAATGTCACTTAGACGACGGGATGTTGAGGAATGGATGAGCCATAGACGCTTAGCAGCAGATCTTAGAAGGAGAGTGAGACAGGCTGAACGTTATAACTGGGCCGCAACAAGGGGGGTGAATGAAGAAATGCTCCTAGAGAATTTGCCAGAAGACCTCCAAAGGGACATTAGACGCCATCTCTTTACATTTATCAAGAAAGTAAGAATTTTTGCCTTGTTGGATGAGCCAATCTTGGATGCCATATGTGAGAGGCTAAGACAAAAAACATACATCAAAGGAAGCAAAATTTTGTATGATGGTGGTCTGGTAGAGAAGATGGTTTTTATAGTGCGTGGAAAATTGGAGAGCATTGGCGAAGATGGAATCAGTGCTCCTCTTTATGAAGGGAGTGTTTGTGGTGAAGAACTTCTGACATGGTGTCTCGAGCATCCTTTAGCAAGCGAAGGTTGTGGGAAAGCAAGGATTCCAAGGCAAAAGTTGGTTGGCAACAGGACAGTATGTTGCTTAACAAATGTGGAGGCATTTTCCCTTAGAGCAGCAGACCTTGAAGAAGTTACAAGCCTTTTTGCCAGATTCTTTAGGAGTACTCGTGTTCAAGGAGCCATAAGGTATGAATCACCTTATTGGAGATGCTTTGCAGCAACGAGCATCCAGGTTTCTGAATTAATTATCAAGGAAAGATGGCTAATTTTGAAAATGATAAGCTGCCGATGCTGTCAGATACAGATGCACAACCATTTGATGAACGTGAATCCTCGGATTCTAAATTCCGAAGGATAA 1641 0.4034 MLVVLRSINDFIHFLNIVLQFRLAYVAPESRVVGAGELVDHPKKIAFHYFRTSFIIDLFVVLPLPQIFIVFVLPKHLETGSTGANYSKNLLRNVILVQYIPRLCRFLPMLISPSGFIFESPWASFFINLFTFMLSGHFVGSWWYLFGLQRVNMCLRRACKITNISECTKFIDCGHGQTADYQNKTNWLKWKNSSVASACFTEDGFEYGIYLKAVNLTANHNVINRYVYSSFWGFQQISTLAGNLIPSYDVCEVLFTMAIIGSGLLLFALLIGNIQNFLQALGRRRLEMSLRRRDVEEWMSHRRLAADLRRRVRQAERYNWAATRGVNEEMLLENLPEDLQRDIRRHLFTFIKKVRIFALLDEPILDAICERLRQKTYIKGSKILYDGGLVEKMVFIVRGKLESIGEDGISAPLYEGSVCGEELLTWCLEHPLASEGCGKARIPRQKLVGNRTVCCLTNVEAFSLRAADLEEVTSLFARFFRSTRVQGAIRYESPYWRCFAATSIQVSELIIKERWLILKMISCRCCQIQMHNHLMNVNPRILNSEG 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00363 546 Gene3D Jelly Rolls 354 478 IPR014710 -
Cca08g00363 546 Gene3D - 1 281 - -
Cca08g00363 546 SUPERFAMILY cAMP-binding domain-like 284 479 IPR018490 -
Cca08g00363 546 CDD CAP_ED 356 472 IPR000595 -
Cca08g00363 546 Gene3D Helix hairpin bin 283 348 - -
Cca08g00363 546 ProSiteProfiles cAMP/cGMP binding motif profile. 356 434 IPR000595 -
Cca08g00363 546 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 507 - -
Cca08g00363 546 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 2 507 - -
Cca08g00363 546 SUPERFAMILY Voltage-gated potassium channels 2 285 - -
Cca08g00363 546 SMART cnmp_10 356 491 IPR000595 -
Cca08g00363 546 Pfam Ion transport protein 2 284 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00363 Cca-Chr8 5493338 5503226 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00363 2 436 Ion Channels AT3G17700 67.735 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00363 K05391 - gmx:100782506 885.945