Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00359 ATGAACACTGCTACTGCCACCAGAAGAAAGATTCAGAAAAAATGTAGGATCCGAGGCCACACCCTCACAGTCGACGCTCTCGACGAGATCCTCAGCTTTGCCGCTAACTTTCCAGGCTCCGATGAAGACGAAGCCATCGATCTCCTCCTCGACCAGATTGAATATTCCTTGAAATCCACCATAATCGAGAAGGAGATGGTGGTCCGTGTGGCGACTCTGTTATTGGAAGAAGACGCAACGCCGGAGGAAGCTGCTTCTGTCATTCGCTTCATTGACGCGTTTGTTATTCCCAAGTATAAATACCATGTCGTCAGAAAACAATTCTACCAGTATACAGGCAGCTTACCTATTCATGGAGAAGCATCAGCAAAAGCGGCTCTGTACAGGGATAGGTTTCTGTTGTTGTCCCAGAGGCTCTCTCGTGACCAGCATTTTTCAAAGCCTGCTTTTGAATCTGAATTTTCACATTTTGGGAGCTGTGAGATATCTCCTATTCAATCTCTGGTTGGACAACCAGGTAGAAGATGGGTAATGGGAGTTATATCTCAGCTGGAGGATGGTCATTACTATCTGGAAGACCTTACGGCTGCTGTTAAAATCAGCTTGTCCAACGCAAAGATAACTACAGGACTCTTTACAGAGAACACTATTGTTGTGGTCGAAGGGGAGATGCTTGTGGAGGGTATTTTTCAGGTGTTAACATGTGGATTTCCTCCATTGGAGGATAGAGATAAGTCACTTAAACTATTTGCAGGCCATGACTATTTTGGTTGTGGTACTTTTACCAAAGAGGAAACTATCAGATTGGCAGAGATGGAGAAAAGGGCAATCAATGACAGGTTGGTTGTACTCTCTGATATTTGGCTAGACAATGAACAGGCTTTGAGAAAGCTAGAGACTGTTTTGGATGGTTTTGAAAGTGTGGAAGTGGTCCCTTCCTTATTTGTTTTCATGGGAAACTTCTCTTCTCGACCATGTAACCTCGCATTTCATTCTTATTCGAGCCTCAGAATGCAGTTTGGTAAGCTGGGGGAAATGATTGCCGCCCATCCACGGCTAACAGCGCACAGTAAATTCCTGTTTATTCCAGGTCCTGATGATGCAGTTCCGTCAACAGTTCTTCCTATGTGTGCTCTACCGAAATATTTAACTGAGGAGCTCCGAAAGCACGTTCCCAATGCCATATTTTATAGTAACCCCTGCAGGATCAAATTCTATACCCAAGAAATTGTATTTTTTCGCCAGGATTTGCTGTATAGAATGCGTCGCTCTTGTTTGATGCCTCCTTCTACAGAAGAAACTGATGATCATTTTCAGCATCTTGTTGCTACCATAACACATCAGAGTCATCTGTGTCCACTCCCTCTAACTGTACAACCCATCATCTGGAATTATGATCATTGTCTTCATCTTTATCCAACACCACACACGATAGTGTTGGGTGACAAAAGTCAGCAGAAGGCATTCAAGTACACCGGAATCACTTGTTTTAATACAGGTTCCTTCGCAATTGACAGCACATTTGTGGCATACCGTCCTTCCTCTCAAGAAGTTGAATTGTCAGCCTTGTAG 1572 0.4389 MNTATATRRKIQKKCRIRGHTLTVDALDEILSFAANFPGSDEDEAIDLLLDQIEYSLKSTIIEKEMVVRVATLLLEEDATPEEAASVIRFIDAFVIPKYKYHVVRKQFYQYTGSLPIHGEASAKAALYRDRFLLLSQRLSRDQHFSKPAFESEFSHFGSCEISPIQSLVGQPGRRWVMGVISQLEDGHYYLEDLTAAVKISLSNAKITTGLFTENTIVVVEGEMLVEGIFQVLTCGFPPLEDRDKSLKLFAGHDYFGCGTFTKEETIRLAEMEKRAINDRLVVLSDIWLDNEQALRKLETVLDGFESVEVVPSLFVFMGNFSSRPCNLAFHSYSSLRMQFGKLGEMIAAHPRLTAHSKFLFIPGPDDAVPSTVLPMCALPKYLTEELRKHVPNAIFYSNPCRIKFYTQEIVFFRQDLLYRMRRSCLMPPSTEETDDHFQHLVATITHQSHLCPLPLTVQPIIWNYDHCLHLYPTPHTIVLGDKSQQKAFKYTGITCFNTGSFAIDSTFVAYRPSSQEVELSAL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00359 523 Gene3D - 3 72 - -
Cca08g00359 523 PIRSF DNA_pol_epsilon_2 1 523 IPR016266 GO:0003677|GO:0006261|GO:0008622
Cca08g00359 523 Pfam DNA polymerase alpha/epsilon subunit B 282 486 IPR007185 GO:0003677|GO:0006260
Cca08g00359 523 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 8 522 IPR016266 GO:0003677|GO:0006261|GO:0008622
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00359 Cca-Chr8 5427329 5432532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00359 18 480 Core DNA Replication Machinery Family AT5G22110 69.313 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00359 K02325 - gmx:100784116 876.315