Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00357 ATGTGTAGTAGAGGCCATTGGAGGCCAGCTGAAGATGAGAAGCTTAGGGAATTGGTGGAACGCTATGGACCTCATAATTGGAACGCCATAGCTGAGAAGTTTCGAGGAAGATCAGGGAAAAGTTGTAGGTTGAGATGGTTCAATCAATTGGACCCAAGAATAAACAGAAAGCGTCTTCTAGCTTCCCACAGGATTCATGGTAACAGATGGGCTGTGATCGCAAGACACTTCCCAGGAAGAACTGATAACGCTGTCAAAAACCATTGGCATGTGATGATGGCAAGGATTCGCAGAGAGAGGTCTAAAATTTATAATGCAAAACAACCCCTTTTTCCTCCAAATATTGAGACTATCCCTTCTTTTGTTGACAAGTATTATGAAAAGTATAGTAGCCACCACCACCCACATAACCATTTGCAATTTCCCAACAAGTTTTACTTTCATCATCCAACTTCTGCTTCCACACTGCCTCCAGCAGAGAGGAGTCAATCAGTAGAGTTCTATGATTTTCTTCAAGTAAATACCGATTCCAATAAAAGTGAAGTGACAGACAATGCCAAAATTAATATAAGAGATGATGAGGAAGTGAGTCAAGATGCTGTGGGACACAAGAACAAGAACAATAGTCTTCCATTTATTGATTTTTTGTCTACTCCAGCCTGCTAA 666 0.4099 MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKFRGRSGKSCRLRWFNQLDPRINRKRLLASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERSKIYNAKQPLFPPNIETIPSFVDKYYEKYSSHHHPHNHLQFPNKFYFHHPTSASTLPPAERSQSVEFYDFLQVNTDSNKSEVTDNAKINIRDDEEVSQDAVGHKNKNNSLPFIDFLSTPAC 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00357 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 97 IPR017930 -
Cca08g00357 221 PANTHER MYB PROTEIN-RELATED 1 217 - -
Cca08g00357 221 PANTHER TRANSCRIPTION FACTOR MYB54 1 217 - -
Cca08g00357 221 CDD SANT 57 93 IPR001005 -
Cca08g00357 221 Pfam Myb-like DNA-binding domain 4 50 IPR001005 -
Cca08g00357 221 Pfam Myb-like DNA-binding domain 57 91 IPR001005 -
Cca08g00357 221 Gene3D - 57 110 - -
Cca08g00357 221 Gene3D - 4 56 - -
Cca08g00357 221 SMART sant 55 95 IPR001005 -
Cca08g00357 221 SMART sant 3 52 IPR001005 -
Cca08g00357 221 CDD SANT 7 48 IPR001005 -
Cca08g00357 221 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Cca08g00357 221 ProSiteProfiles Myb-like domain profile. 57 93 IPR001005 -
Cca08g00357 221 SUPERFAMILY Homeodomain-like 4 93 IPR009057 -
Cca08g00357 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00357 Cca-Chr8 5387482 5390141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00357 1 218 MYB Transcription Factor Family AT1G17950 51.020 8.04e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca08g00357 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00357 K09422 - gmx:100811746 363.999