Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00348 ATGTTAGCCAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGATAACACCACTGCCACCAATAAAAGGAAGAGAAGGCCCGCAGGAACACCAGATCCAGATGCAGAGGTGGTGTCCCTCTCGCCAAAGACTTTGTTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCATGGAAGCTGTTGAAGAGGGAGACACCAGTGGTGAGGAAGAGAGTGTTCGTGTGTCCTGAACCAACTTGTTTGCACCATGACCCATGTCATGCCTTGGGTGATCTTGTTGGGATAAAGAAGCATTTCAGGAGGAAGCACAGCAATCACAAGCAATGGGTTTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACGTGTGGCACCCGGGGCCACTCTTGTGATTGTGGTCGTGTTTTCTCAAGGGTGGAGAGTTTCATTGAGCACCAAGATGCTTGCAACATGGGGAGGCTTAGGCCTGAATCTCAACCTCTTCAACCATCTGCATGCTTGTCTAGAACTGCTTCAAGCCCAAGTCCTTCAAGTGAAACCAATTTCAGCACAGCTCCTTGGCCAACAAGAATGATAATACCAAAGCCAGCAGAACCTCCCACAATTTTCATGAACAACCCTATTACTGCTATCACCACTGCTGAAACCTCATCCAAGAACAACAAACTCCACCCCAACTTGGATCTTCAACTCTCCACCCCCACCAGTaacaacaacaagaacaacaccaacaccagcaccaacacatcaaATATTGGAAACCTCATTGATGCTGCAATATCCCCTAAGAGGGACCATGAGAACCACTCAACCCATTTGCAACTCTCAATTGGTTCATCAGATATGAGTGAGAAAAATGAATCAAACAGGAACTCGTCAGAGAAAAGCAGCAACAGCAACAGCGAGAAGCAGTCCAACATGGCCTTGTTGAGGGTTCAGGAGCAAGCAAGGGAGCACTTGAGGATAGCAATGGCTGAGAAAGCATATGCTGAGGAAGCTAGGAAACAAGCCAAGAGGCAGATTGAACTTGCGGAACAAGAGTTCACAAACGCCAAGAGGATAAGACAACAAGCACAAGCGGAACTGGACAAAGCCTACGCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACTTGCCATGCTTGCAAACAACAGTTCCAAGCTCGAAATGCAGCACCGGACGAGAATTCCTTGGTGTTGAGCTACGTGTCTTCTGCTATAACCACAGAAGGAGGAGAAGTAGAAAACGATAATGGAAAAGATCATATGGGAAAGACAACTAACTCTACTTAG 1410 0.4574 MLANNLSPSSVPTSEPFPCTDNTTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRMIIPKPAEPPTIFMNNPITAITTAETSSKNNKLHPNLDLQLSTPTSNNNKNNTNTSTNTSNIGNLIDAAISPKRDHENHSTHLQLSIGSSDMSEKNESNRNSSEKSSNSNSEKQSNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCHACKQQFQARNAAPDENSLVLSYVSSAITTEGGEVENDNGKDHMGKTTNST 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00348 469 MobiDBLite consensus disorder prediction 250 289 - -
Cca08g00348 469 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Cca08g00348 469 Gene3D Classic Zinc Finger 35 97 - -
Cca08g00348 469 MobiDBLite consensus disorder prediction 194 220 - -
Cca08g00348 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cca08g00348 469 Gene3D Classic Zinc Finger 119 195 - -
Cca08g00348 469 MobiDBLite consensus disorder prediction 193 233 - -
Cca08g00348 469 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 450 - -
Cca08g00348 469 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Cca08g00348 469 MobiDBLite consensus disorder prediction 1 24 - -
Cca08g00348 469 MobiDBLite consensus disorder prediction 448 469 - -
Cca08g00348 469 PANTHER OS03G0310200 PROTEIN 1 450 IPR039288 GO:0009630
Cca08g00348 469 MobiDBLite consensus disorder prediction 250 339 - -
Cca08g00348 469 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cca08g00348 469 Coils Coil 353 408 - -
Cca08g00348 469 MobiDBLite consensus disorder prediction 305 339 - -
Cca08g00348 469 MobiDBLite consensus disorder prediction 1 44 - -
Cca08g00348 469 SMART c2h2final6 57 79 IPR013087 -
Cca08g00348 469 SMART c2h2final6 98 128 IPR013087 -
Cca08g00348 469 SMART c2h2final6 134 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00348 Cca-Chr8 5181618 5185191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00348 20 455 C2H2 Transcription Factor Family AT2G01940 55.286 6.85e-150 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca08g00348 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00348 K25871 - gmx:100800187 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02857 09 54173945 54176500 Cca08g00348 08 5181618 5185191 PCT