Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00346 ATGGATGGTGATAATGGCCTTAATATTCGTAATTGGGGTTACTATGAACCTGCTATTAAGAGCCATCTGGGGCTGCAGCTGATGTCGTCCATGCCAGAAAAACCTTTAATTGGAGGGCGCAATGCTGCGGTTTTATCTGGCACTAATGGGGCATTTCACCATAGGGACATTGGTATGCACCAAGCTACATACCCTACAGAATACATGAGGGATGCATGGATTAGCAGTCAGAGAGACAAGTATATGAATATGATACCTACCAATCATAACTATGGTGGTATTCCGGAGGCATCTTCAGCACATCAAATTCAAATGATTCAAGCACCAGAAATGCCGAAGGAAGAAAAGCCAGTTGAAGAAGCACCAGTTGTTGAGAAGCCAAACGGAACTCGTAAGAAAAGACAGGGTCCCAAGGTTCCCAAATCTCCCAAGGCTAAGAAGCCCAAGAGGGGGCCTCGCACGCCAAAGGATGAGAATACTCCCTCAGTTCAACGTGCAAGGGTTCCGAAGAAAACTACTGAAATTGTAATAAATGGGATTGATATGGATATTTCTAGTATTCCGATTCCTGTTTGTTCATGTACTGGAGCACCTCAACAGTGTTATAGATGGGGCTCTGGTGGTTGGCAGTCTGCATGTTGCACAACCGGCATGTCGATATATCCATTACCTATGAGTACCAAGCGCCGGGGTGCTAGGATAGCTGGGAGGAAAATGAGTATAGGAGCATTTAAAAAAGTTTTAGAGAAACTTGCAGCCGAGGGTTATAACTTTTCTAATCCAATTGACTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACTATCAGgacattgggagaaccataccacaaacattag 870 0.4276 MDGDNGLNIRNWGYYEPAIKSHLGLQLMSSMPEKPLIGGRNAAVLSGTNGAFHHRDIGMHQATYPTEYMRDAWISSQRDKYMNMIPTNHNYGGIPEASSAHQIQMIQAPEMPKEEKPVEEAPVVEKPNGTRKKRQGPKVPKSPKAKKPKRGPRTPKDENTPSVQRARVPKKTTEIVINGIDMDISSIPIPVCSCTGAPQQCYRWGSGGWQSACCTTGMSIYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIRTLGEPYHKH 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00346 289 PANTHER - 1 280 IPR010409 -
Cca08g00346 289 Pfam GAGA binding protein-like family 1 280 IPR010409 -
Cca08g00346 289 SMART GAGA_bind_2 1 280 IPR010409 -
Cca08g00346 289 MobiDBLite consensus disorder prediction 110 172 - -
Cca08g00346 289 MobiDBLite consensus disorder prediction 112 132 - -
Cca08g00346 289 MobiDBLite consensus disorder prediction 133 150 - -
Cca08g00346 289 PANTHER PROTEIN BASIC PENTACYSTEINE2-LIKE 1 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00346 Cca-Chr8 5155575 5157693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00346 1 280 BBR or BPC Transcription factor family AT2G01930 49.662 1.53e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Cca08g00346 GAGA_bind 2.7e-111 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00346 - - gmx:606296 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00346 08 5155575 5157693 Cca08g00346 08 5155575 5157693 ECH