Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00345 ATGGAAAACTCAAACTGCGTCTACAGAGAGTGCCTCCGCAACCACGCCGCCAGCCTGGGGAGCTACGCCACCGACGGCTGCGGCGAGTTCACGCTGCAGGAGGGGTCCCTCCAGTGCGGCGCCTGCGGGTGCCACCGCAACTTCCACCGCAAGGCGGCCTGCgagggggcggaggtggtggggggcggagagaggagcaagaagaggTTCCGGACGAAGTTCAGCGCGGAGCAGAAGGAGAAGATGGTTGTGTTCGCGGAGAAGCTGGGGTGGAAGCTGCAGCGGAGAGAGGTTGACGACGAGATAGAGAGGTTCTGCCGAAGCGTTGGTGTTAGCAGACAGGTTTTCAAGCTTGGAGCGAGCTAA 366 0.541 MENSNCVYRECLRNHAASLGSYATDGCGEFTLQEGSLQCGACGCHRNFHRKAACEGAEVVGGGERSKKRFRTKFSAEQKEKMVVFAEKLGWKLQRREVDDEIERFCRSVGVSRQVFKLGAS 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00345 121 SUPERFAMILY Homeodomain-like 61 117 IPR009057 -
Cca08g00345 121 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 118 - -
Cca08g00345 121 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 8 52 IPR006456 -
Cca08g00345 121 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 8 52 IPR006456 -
Cca08g00345 121 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 1 118 - -
Cca08g00345 121 Gene3D - 54 118 - -
Cca08g00345 121 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 67 117 IPR006455 -
Cca08g00345 121 Pfam ZF-HD protein dimerisation region 6 52 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00345 Cca-Chr8 5132993 5136775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00345 8 118 ZF-HD Transcription Factor Family AT2G18350 41.420 4.46e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca08g00345 ZF-HD_dimer 3.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00345 - - ccaj:109819202 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02856 09 54156495 54157315 Cca08g00345 08 5132993 5136775 PCT