Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00340 ATGCCCCAGAATCCGATTCCTGATCTTTCCCTTCACATTAGCCTCCCAAACAGTGCTCCTTCTTCAATTTTCACCCAAGGGGATTCAGATTCACTCTTTGATATATGGCCACAGCAAGGAGATGATGCTGAAGGCCTCAAATCCCACAGTGATGGCTCAATCAAAGGTAGCCCTCACACAGACACACAACTTTCCTTAGCCAACCCCACAAGTACCACTCGCTCTGAGGCTGAAAGCACCTGGAGGAAGAGAAACTTTGTTAGAGTTCTCCATGGGGTTTCTGAGGCTGAAAAACTAAGACTCATCAATGGAATCTCTCTCTACAGTAACCTTCCTTCTTTGGACAACAGTACTAGTTTAACTATTCCCTCAATAGAGAGAATAAACTCCACCAATAAGCTATCTTCTCTATATGCAGTTCCACACCCTCCTTATTCCTCTAATTCAGCTCCTAATTACAATAATAATGGTATTATTGGGGGTGTAGCAGTGGAACAAATATCAAGGTTTCATGAGATAGCCTTGGAGAATCTAGGACCCCAACAGTTTCAGTACTTTGGTTATCCTCATCATCAACAGTATCAGCAGCATCAGTTTGGGAATAGTAATAATATTGGAGCTTCTTCTGATTTTTCAAATGGATTTGTGAAGTCAAGAATGTTGCCAAGGCAGCAAAGTAAGAGGAACATGAGGGCTCCAAGAATGCGTTGGACTAGCTCTCTTCATAATCGCTTTGTTCATGCTGTTGAGCTACTTGGTGGCCATGAAAGGGCTACTCCTAAGTCAGTTTTGGAGCTCATGGATGTCAAAGATTTAACACTAGCTCATGTCAAGAGCCATTTGCAGATGTATAGGACTGTTAAGAACACTGACAAACCTGCAGCTTCTTCAGATGGGGATGAGGATTTCATATCCCTAACAGTACCTAATAATCAAAATAAGAACTTTTTTCCCAATCAGAGAGGACCTCCAAATGCATCTATTGATAATGATATGGGCTACACTTGCAGCAATCTATGGGTTAATTCTTCTTCCAGGTAA 1041 0.4188 MPQNPIPDLSLHISLPNSAPSSIFTQGDSDSLFDIWPQQGDDAEGLKSHSDGSIKGSPHTDTQLSLANPTSTTRSEAESTWRKRNFVRVLHGVSEAEKLRLINGISLYSNLPSLDNSTSLTIPSIERINSTNKLSSLYAVPHPPYSSNSAPNYNNNGIIGGVAVEQISRFHEIALENLGPQQFQYFGYPHHQQYQQHQFGNSNNIGASSDFSNGFVKSRMLPRQQSKRNMRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDEDFISLTVPNNQNKNFFPNQRGPPNASIDNDMGYTCSNLWVNSSSR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00340 346 MobiDBLite consensus disorder prediction 36 78 - -
Cca08g00340 346 SUPERFAMILY Homeodomain-like 230 287 IPR009057 -
Cca08g00340 346 MobiDBLite consensus disorder prediction 53 76 - -
Cca08g00340 346 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 233 286 IPR006447 GO:0003677
Cca08g00340 346 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 3 345 - -
Cca08g00340 346 Pfam Myb-like DNA-binding domain 234 285 IPR001005 -
Cca08g00340 346 Gene3D - 232 289 - -
Cca08g00340 346 MobiDBLite consensus disorder prediction 311 330 - -
Cca08g00340 346 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 3 345 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00340 Cca-Chr8 5030955 5034260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00340 214 299 G2-like Transcription Factor Family AT5G16560 86.047 9.79e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca08g00340 Myb_DNA-binding 9.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00340 - - gmx:100796973 441.039