Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00338 ATGAACACTGTCTCCTCAATTCAACCACCTCACCATTTCCATTGCACAACATTCTTCTCTTACACTACCACAAGGACTCAACTTTCTTTTCCTGCAAAGGTCTTCTTTTGCCAGGCAAAATCTGGCATAGATGGATCATTGAATTTAAAAGTGGTGTCTCCCACTCTGTTAGCAGCAGAAAGGGAAGAAGCCAAGGCTGTATTGACCTTGTTTTTGAAGAAACATGGTTTGAGCAATGCGGTTGCTGCTAGAACCATCAATAAATCAGATCTTTTTATTGATCACCTTGTCTCAAAGCTTCATTCTAAACACAAATCTTGGTATCTTGCAGGGAGGGAGCTTACAACTCTGGAGATCAGGAACGCCCTTATCCCGTATCTTGAATCTCTTTTTGAAGAGCATGGAGACTTTCTAGTGGATGTTGTGGAAAACTATCCAAATCCACCTATTAAGGATAAATCAGATGTACCAATTCCTCCTTCTAGTCCAGTGTTAGACTCTAAGAAGCTAAAAGCGGTGTCTCGGGTGAGTGAGATAGACCTGGACAGTGGCAATCTTCGCCCTCATATTGTCTATCTCATGGAACTTGGTATGGATATTGAGCAGATTAGGAGTATCACGCGACGATTCCCATCTTTTGCATACTATAGCTTGGAGGGTAAAGTTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCAATAGAGAACATTCCCACTATCCTCACTAAAAGGCCTCAATTATGTGGAATCAGTCTATCTGAGAATCTTAAACCCACCATGAAGTTCTTAGAATCTTTGGGCGTTGACAAGAAGCAATGGCCGAAGGTGATCTATCGTTTCCCCGCCCTACTAACTTATAGCAGGCAGAAAGTGATGGAAAGCATAGATTTTCTCCATGAATTGGGCCTCTCAGAAGAGAGTATAGATGCCCACAGAATTTTGGTCTTAGCATTGAGACCAACCTAA 972 0.4208 MNTVSSIQPPHHFHCTTFFSYTTTRTQLSFPAKVFFCQAKSGIDGSLNLKVVSPTLLAAEREEAKAVLTLFLKKHGLSNAVAARTINKSDLFIDHLVSKLHSKHKSWYLAGRELTTLEIRNALIPYLESLFEEHGDFLVDVVENYPNPPIKDKSDVPIPPSSPVLDSKKLKAVSRVSEIDLDSGNLRPHIVYLMELGMDIEQIRSITRRFPSFAYYSLEGKVKPVVEFFLELGVPIENIPTILTKRPQLCGISLSENLKPTMKFLESLGVDKKQWPKVIYRFPALLTYSRQKVMESIDFLHELGLSEESIDAHRILVLALRPT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00338 323 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Cca08g00338 323 SMART mt_12 167 199 IPR003690 GO:0003690|GO:0006355
Cca08g00338 323 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Cca08g00338 323 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Cca08g00338 323 PANTHER CGI-12 PROTEIN-RELATED 22 310 IPR003690 GO:0003690|GO:0006355
Cca08g00338 323 Gene3D Transcription termination factor 3, mitochondrial 165 317 IPR038538 -
Cca08g00338 323 Pfam mTERF 184 310 IPR003690 GO:0003690|GO:0006355
Cca08g00338 323 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 22 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00338 Cca-Chr8 4989073 4991339 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca08g00338 mTERF 8.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00338 K15032 K12177 gmx:100781900 529.635