Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca08g00337 | ATGATTTCAAGATATGGAGCCTTGTACACTTTCAGCTTGACGGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACAGGTTACCCAAAATCTGAGCTGGTTAAGTTCCCTCAGTATTTTGGATACAGTTTAGAGGAAAGGATTAAACCTAGGTTTGCAATTGTGAAAAAATCTGGAGTAAAGTTACTTTTGAACCAGTTAGTTAGGGATTCAATAGCACGATGA | 228 | 0.364 | MISRYGALYTFSLTENLIPKWDFFLTTGYPKSELVKFPQYFGYSLEERIKPRFAIVKKSGVKLLLNQLVRDSIAR | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca08g00337 | 75 | PANTHER | TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC | 1 | 69 | - | - | |
| Cca08g00337 | 75 | SMART | mt_12 | 31 | 62 | IPR003690 | GO:0003690|GO:0006355 | |
| Cca08g00337 | 75 | SMART | mt_12 | 1 | 30 | IPR003690 | GO:0003690|GO:0006355 | |
| Cca08g00337 | 75 | Gene3D | Transcription termination factor 3, mitochondrial | 1 | 72 | IPR038538 | - | |
| Cca08g00337 | 75 | PANTHER | CGI-12 PROTEIN-RELATED | 1 | 69 | IPR003690 | GO:0003690|GO:0006355 | |
| Cca08g00337 | 75 | Pfam | mTERF | 1 | 67 | IPR003690 | GO:0003690|GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca08g00337 | Cca-Chr8 | 4988621 | 4989016 | Proximal |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | mTERF | Cca08g00337 | mTERF | 5.5e-13 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca08g00337 | K15032 | - | gmx:100781900 | 133.265 |