Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00335 ATGAACACTGTCTCCTCAATTCAACCACCTCACCATTTCCATTGCACAACATTCTTCTCTTACACTACCACAAGGACTCAACTTTCTTTTCCTGCAAAGGTCTTCTTTTGCCAGGCAAAATCTGGCATAGATGGATCATTGAATTTAAAAGTGGTGTCTCCCACTCTGTTAGCAGCAGAAAGGGAAGAAGCCAAGGCTGTATTGACCTTGTTTTTGAAGAAACATGGTTTGAGCAATGCGGTTGCTGCTAGAACCATCAATAAATCAGATCTTTTTATTGATCACCTTGTCTCAAAGCTTCATTCTAAACACAAATCTTGGTATCTTGCAGGGAGGGAGCTTACAACTCTGGAGATCAGGAACGCCCTTATCCCGTATCTTGAATCTCTTTTTGAAGAGCATGGAGACTTTCTAGTGGATGTTGTGGAAAACTATCCAAATCCACCTATTAAGGATAAATCAGATGTACCAATTCCTCCTTCTAGTCCAGTGTTAGACTCTAAGAAGCTAAAAGCGGTGTCTCGGGTGAGTGAGATAGACCTGGACAGTGGCAATCTTCGCCCTCATATTGTCTATCTCATGGAACTTGGTATGGATATTGAGCAGATTAGGAGTATCACGCGACGATTCCCATCTTTTGCATACTATAGCTTGGAGGGTAAAGTTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCAATAGAGAACATTCCCACTATCCTCACTAAAAGGCCTCAATTATGTGGAATCAGTCTATCTGAGAATCTTAAACCCACCATGAAGTTCTTAGAATCTTTGGGCGTTGACAAGAAGCAATGGCCGAAGGTGATCTATCGTTTCCCCGCCCTACTAACTTATAGCAGGCAGAAAGTGATGGAAAGCATAGATTTTCTCCATGAATTGGGCCTCTCAGAAGAGAGTATAGGTAAGATTTTAACTCGCTGCCCCAATATTGTGAGTTACAGTGTAGAGGACAATCTTCGACCAACAGCTAACTACTTCCGTTCTTTGGGGGTTGATGTTGGCATTCTTCTATTCAGATGCCCACAGAATTTTGGTCTTAGCATTGAGACCAACCTAAAGCCTGTAACAGAGTTCTTCTTGGAGAGGGGATACACTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTACACTTTCAGCTTGACGGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACAGGTTACCCAAAATCTGAGCTGGTTAAGTTCCCTCAGTATTTTGGATACAGTTTAGAGGAAAGGATTAAACCTAGGTTTGCAATTGTGAAAAAATCTGGAGTAAAGTTACTTTTGAACCAGTTAGTTAGGGATTCAATAGCACGATGA 1371 0.4136 MNTVSSIQPPHHFHCTTFFSYTTTRTQLSFPAKVFFCQAKSGIDGSLNLKVVSPTLLAAEREEAKAVLTLFLKKHGLSNAVAARTINKSDLFIDHLVSKLHSKHKSWYLAGRELTTLEIRNALIPYLESLFEEHGDFLVDVVENYPNPPIKDKSDVPIPPSSPVLDSKKLKAVSRVSEIDLDSGNLRPHIVYLMELGMDIEQIRSITRRFPSFAYYSLEGKVKPVVEFFLELGVPIENIPTILTKRPQLCGISLSENLKPTMKFLESLGVDKKQWPKVIYRFPALLTYSRQKVMESIDFLHELGLSEESIGKILTRCPNIVSYSVEDNLRPTANYFRSLGVDVGILLFRCPQNFGLSIETNLKPVTEFFLERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPKSELVKFPQYFGYSLEERIKPRFAIVKKSGVKLLLNQLVRDSIAR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00335 456 PANTHER CGI-12 PROTEIN-RELATED 23 450 IPR003690 GO:0003690|GO:0006355
Cca08g00335 456 Pfam mTERF 348 447 IPR003690 GO:0003690|GO:0006355
Cca08g00335 456 Pfam mTERF 190 371 IPR003690 GO:0003690|GO:0006355
Cca08g00335 456 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Cca08g00335 456 SMART mt_12 167 199 IPR003690 GO:0003690|GO:0006355
Cca08g00335 456 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Cca08g00335 456 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Cca08g00335 456 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Cca08g00335 456 SMART mt_12 344 375 IPR003690 GO:0003690|GO:0006355
Cca08g00335 456 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Cca08g00335 456 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Cca08g00335 456 Gene3D Transcription termination factor 3, mitochondrial 247 453 IPR038538 -
Cca08g00335 456 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 23 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00335 Cca-Chr8 4948141 4950732 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca08g00335 mTERF 8.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00335 K15032 K12177 gmx:100781900 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00335 08 4948141 4950732 Cca08g00335 08 4948141 4950732 ECH