Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00332 ATGGTGTTGGGATGGAGAAGAAGGAAGGGCAACAAAGGTGGGAAGCCCAAGATGGAGTTGGTGATTCCAAACCACTTCAGGTGTCCAATTTCTCTTGATTTGATGAAGGATCCTGTGACATTGTCAACTGGCATCACATATGATAGAGAGAGTGTGGAGAGGTGGTTTCATGAAGGGAACATCACTTGTCCAGTTACCAACCAAGTTGTGAGGAACTTTGACATGATTCCAAATCATTCCCTCAGGATCATGATTCAAGATTGGTGTGTGGAGAATAGGCAACATGGTGTGGAGAGAATTCCAACTCCAAGGATACCAGTTACCCCAATTGAGGTTGCTGATCTTCTCATGCAGGTGAAGGCCTCATCAAGGGGTTTGGACCAACATGGTTGCCTTGAGTTGGTGCACAAAATGGAGAAATGGGGTGGTGAGAGTGAGAGGAACAAGAGGTGCATAGTGGACAATGGTGCACCTGTGACCCTAGCTTGTGCCTTTGATGCCTTTGCAAATGACTCAGTGGAGAGGAATGTGGTGGTTCTTGAGGAGATTCTGTCATCACTCAATTGGATGTTTCCACTTCAATTGGAGGCACACAAGTGTTTGGGGTCCTTGGCTTCTTTGAGATGCATGGTTTGGTTCTTGAAGCACCAAGATCTCTCAGGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCTCTCAGGGAAAGAGAAGTCCATTGTGGCATTGAAAGAGCTTCTTTCCTTTGGTGATGAGCACCATGTGGAGGCCCTGTCACAAATTGAAGGGGTCAATGAGCTTTTGGTGGAGTTCATCAACAAGAGGGTTAGTCCAACCATCACAAAGTCATCATTGAGGGTGGTTTGGTACTTGGTTTCCTCCTCTTCCAATTCAAGTGAGAGGATCAAGTTACGTTTTGTTGAATTGGGTTTGGTTTCTTCTTTGCTTGACATTCTCATTGACTCTGACAAGAGCATGTGTGAGAAGGCTTTGGCCATTTTGGACTCTCTATGCAGCATTGAAGAAGGGAGAAACAAGGCGTGTGGGAATGACCTCACAATTCCTCTTTTGGTGAAGAAAATTCTGAGAGTTTCACCATTGACCACAGAACATTCTGTTTCTGCCATATGGAAGCTGTGCAAGTTTGGAGAAAAAGATGAAGGGAGGACCCTTGTTGAGGCCCTTCAAGTTGGTGCATTTCAGAAACTCTTGTTGGTGTTGCAAGTTGGATGTGGTGATGAGACCAAGGAAAAAGCAACTGAGCTTCTCAAATTGTTGAATCCTTATAGGGCTGAATTGGAATGCATAGACTCAGATTACAAGAATGTTAAGAGATCATTTTAA 1443 0.4068 MVLGWRRRKGNKGGKPKMELVIPNHFRCPISLDLMKDPVTLSTGITYDRESVERWFHEGNITCPVTNQVVRNFDMIPNHSLRIMIQDWCVENRQHGVERIPTPRIPVTPIEVADLLMQVKASSRGLDQHGCLELVHKMEKWGGESERNKRCIVDNGAPVTLACAFDAFANDSVERNVVVLEEILSSLNWMFPLQLEAHKCLGSLASLRCMVWFLKHQDLSGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSGKEKSIVALKELLSFGDEHHVEALSQIEGVNELLVEFINKRVSPTITKSSLRVVWYLVSSSSNSSERIKLRFVELGLVSSLLDILIDSDKSMCEKALAILDSLCSIEEGRNKACGNDLTIPLLVKKILRVSPLTTEHSVSAIWKLCKFGEKDEGRTLVEALQVGAFQKLLLVLQVGCGDETKEKATELLKLLNPYRAELECIDSDYKNVKRSF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00332 480 SUPERFAMILY ARM repeat 265 460 IPR016024 -
Cca08g00332 480 PANTHER WDSAM1 PROTEIN 13 223 IPR045185 GO:0061630
Cca08g00332 480 PANTHER WDSAM1 PROTEIN 264 480 IPR045185 GO:0061630
Cca08g00332 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 100 IPR013083 -
Cca08g00332 480 ProSiteProfiles U-box domain profile. 21 95 IPR003613 GO:0004842|GO:0016567
Cca08g00332 480 Gene3D - 263 474 IPR011989 -
Cca08g00332 480 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 264 480 - -
Cca08g00332 480 CDD RING-Ubox_PUB 26 68 IPR045210 -
Cca08g00332 480 SUPERFAMILY RING/U-box 19 98 - -
Cca08g00332 480 SMART Ubox_2 25 88 IPR003613 GO:0004842|GO:0016567
Cca08g00332 480 Pfam U-box domain 22 93 IPR003613 GO:0004842|GO:0016567
Cca08g00332 480 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00332 Cca-Chr8 4907322 4908764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00332 5 480 U-box Gene Family AT5G37490 40.369 4.01e-108 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00332 - - gmx:100794340 708.753