Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00328 atggccctcgtccgccaccgccgccaccccaacctccgccgccccctcccggagccctccgacccccgcccccgcctcccccccccccccgcccNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCGGCGACCTTGAAAAACTCGCCGTCCTCGGCCACGGCAACGGTGGCACCGTCTACAAGGTCCGCCACCGGACCACCTCCGCCACCTACGCGCTGAAAATCATCCACAGCGACGCCGACGCCACCACGCGCCGCCGCGCCCTCTCGGAGACCTCCATCCTCCGCCGCGCCACCGACTGCCCCCACGTGGTCCGCTTCCACGGCTCCTTCGAGAAGCCCTCAGGTGACGTGGCAATTCTCATGGAGTACGTGGACGGCGGAACCCTCGAGTCTGCACTCACTCACGGCGGCACGTTCTCCGAAGAGAGACTTGCCGCCGTGGCACGTGAGGTGCTCGAGGGTCTCGCGTATCTCCACGCGCTCAACATCGCCCACCGCGACATCAAGCCCGCAAACATCCTCGTATCTTCTGACGGCAGTGTCAAAATTGCAGACTTTGGAGTTAGCAAACTCATGTGCCGCACGCTTGAAGCGTGCAACTCTTATGTTGGCACGTGCGCCTACATGAGCCCCGAACGGTTCGACCCGGAAGCGTATGGCGGGAACTATAACGGTTTTGCTGCGGATATTTGGAGTTTGGGTTTGACCCTATTTGAACTCTACGTGGGTCACTTCCCTTTCCTTCAGGCGGGTCAGAGACCCGATTGGGCCACTCTCATGTGCTCCATTTGCTTCAGCGACCCGCCGACTCTTCCTGAGACTGTCTCGACGGAGTTTCGTAACTTCGTCGAATGTTGTCTCAGGAAAGAATCCGGCGAGAGGTGGACGGCAGCTCAGCTCTTGACCCACCCGTTTGTTTGTAAAGATCCAAAATCATGTTAA 945 0.5132 MALVRHRRHPNLRRPLPEPSDPRPRLPPPPAXXXXXXXXXXAGDLEKLAVLGHGNGGTVYKVRHRTTSATYALKIIHSDADATTRRRALSETSILRRATDCPHVVRFHGSFEKPSGDVAILMEYVDGGTLESALTHGGTFSEERLAAVAREVLEGLAYLHALNIAHRDIKPANILVSSDGSVKIADFGVSKLMCRTLEACNSYVGTCAYMSPERFDPEAYGGNYNGFAADIWSLGLTLFELYVGHFPFLQAGQRPDWATLMCSICFSDPPTLPETVSTEFRNFVECCLRKESGERWTAAQLLTHPFVCKDPKSC 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00328 314 Pfam Protein kinase domain 46 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00328 314 SUPERFAMILY Protein kinase-like (PK-like) 43 309 IPR011009 -
Cca08g00328 314 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 3 310 - -
Cca08g00328 314 Gene3D Transferase(Phosphotransferase) domain 1 121 313 - -
Cca08g00328 314 CDD PKc_MAPKK_plant_like 44 307 - -
Cca08g00328 314 Gene3D Phosphorylase Kinase; domain 1 38 120 - -
Cca08g00328 314 ProSiteProfiles Protein kinase domain profile. 45 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00328 314 MobiDBLite consensus disorder prediction 1 38 - -
Cca08g00328 314 SMART serkin_6 45 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00328 314 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Cca08g00328 314 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 3 310 - -
Cca08g00328 314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00328 Cca-Chr8 4854132 4855479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00328 1 310 MAP Kinase Kinase Gene Family AT1G73500 60.064 5.00e-125 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Cca08g00328 Pkinase 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00328 K20604 - gmx:100804100 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00328 08 4854132 4855479 Cca08g00328 08 4854132 4855479 ECH