Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00326 ATGGAATCTCATACCCCAAACACCAACGACACTATTGAGATTGAGGCCTACAAACAACAACAACTTGAGGAAGAAGATGATGATGAAGAAGAAAACAATGAGATCCTCAAGAGAAGAATCTCCAACCATCCTCTCTATGGATTGCTGGTTGAAGCTCACTTGGACTGTTTGAAGGTTGGTGACATTTCCAACTTGGAAAGAGAGTTGAAGATAGATGAGATGCAAGCAAGGGAGAAGCAAAACATGGGCATGTTCAGCCAGTCTGAGCTTGATCTCTTCATGGAAGCATATTGCTTGGCACTTGGGAAGCTGAAAGAAGCAATGGTGGAACCACAGCAGAAGTCCATGGCGTTCATAAACAACATGCATTCACAGCTTAGGGAGCTCACAAAGGCAACATTGCCTGCACCACCTGAACCTGCAGCATCTTCTAGTGAGTGCAAATTGATAAGAAGAAACCCCACAATTTAG 471 0.4395 MESHTPNTNDTIEIEAYKQQQLEEEDDDEEENNEILKRRISNHPLYGLLVEAHLDCLKVGDISNLERELKIDEMQAREKQNMGMFSQSELDLFMEAYCLALGKLKEAMVEPQQKSMAFINNMHSQLRELTKATLPAPPEPAASSSECKLIRRNPTI 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00326 156 Coils Coil 19 39 - -
Cca08g00326 156 PANTHER FUSED COMPOUND LEAF 1 17 127 - -
Cca08g00326 156 Pfam KNOX2 domain 88 130 IPR005541 GO:0003677|GO:0005634
Cca08g00326 156 Coils Coil 62 82 - -
Cca08g00326 156 MobiDBLite consensus disorder prediction 1 16 - -
Cca08g00326 156 MobiDBLite consensus disorder prediction 1 32 - -
Cca08g00326 156 SMART KNOX2_2 80 131 IPR005541 GO:0003677|GO:0005634
Cca08g00326 156 SMART KNOX1_2 34 80 IPR005540 GO:0003677|GO:0005634
Cca08g00326 156 Pfam KNOX1 domain 36 60 IPR005540 GO:0003677|GO:0005634
Cca08g00326 156 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 17 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00326 Cca-Chr8 4803952 4808826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00326 34 134 Homeobox Transcription Factor Family AT4G08150 35.514 1.40e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00326 - - gmx:100805160 209.534