Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00325 ATGGCAACACTAACTAGGTCTATTGAGGAAGAAACGACCCGCATGCATCCAGGGTCTTTCCGAATGCGTGACGAGGCTTTTAATGCCATTCAAGTGTCTCACCAAATTTGGGACAGCTGGAAacacaacactcacaacAATAAGCGAATCATCGAAGTGTCCATTCTCTCTTCCTTCCCTCATCTCCAGGAGGATTATAGAGATATGAGCTCTCAACTTCGAAGAGAAAGAAGGGACGGGTCCAGGGTTCCATCACAAGGTGCTACTCGTCAAGAATGGGTCCCCAGAAGGAGTGCTGCATCCACCACTTCTGTTCAGCCCTCAAATTTGCACTCGAATAACAATGCTGATGCTGGTTCTTCCAATCAAGGGGTCCCCGTTGCTCCGGTCACTCTCCATAGAAGCAATCATGGGACTCATAGGGTGGAAAGCAATCATGGGAGTCATAGGGTGGAAAGCAATCATGGACCTCATAGGGCggaaagggaaagggaaagagataaaggaaggaggagtgggaaTCAGGTGGGGAGGGGATTGAGTTTGGGAGTCAGAGACTCTAGTTTGCCTCAATTGGTGCAGGAGATTCAGGAGAAGCTCTTGAAAAGTACTGTGGAGTGCATGATATGCTGTGAAATGGTAAAGAGGTCTGCGCCTGTTTGGTCTTGCTCCAGCTGCTATGCTATCTTTCATCTGAATTGCATCAAGATTTGGGCCAGGGCACCCATCTCGGGTGATTTTTCTGTGGAGAAGAATCAAGGGATTAATTGGCGGTGTCCTGGTTGTCAGTTTGTGCAGCTCACCTCTTCTAAGGAGATTCGGTATGTTTGCTTTTGTGGGAAGAGGACAAACCCTCCTTCTGATTTGTATCTGACACCACATTCATGTGGAGAACCATGTGGGAAGCCTCTTGAGAGGGAGGTGTTGGTTGCTGGAAGTAATAAGGATGACCTTTGCCCTCATTCTTGTGTCTTGCAATGCCATCCAGGGCCATGCCCTCCTTGTAAAGCATTTGCTCCCCCACGGTTGTGCCCTTGTGGGAAGAAAACTATTGCCACCCGCTGCTCTGATAGGAGGTCTGTTCTTACCTGTGGACAGTGCTGTGGTAAGCTTCTTGAATGTGAGCGCCATCCCTGTGAACGCATTTGTCACATTGGTCCCTGCGATCCTTGTCAAGTTTCGATCAATGCCTCATGCTTTTGTACTAAAACGACGGAGGTTATTCCTTGTGGGCAGATGGCTGTGAAGGGTGAAATTGAAGCAAAAGGTGGGGTTTTTTCTTGTGGTTCCTATTGTCTAAAGAAACGTAGTTGTGGTAATCATGTCTGTAGCGAGTATTGTCATCCAGGCAGCTGTGGGGAATGTGAGCTTTTACCAAGCCGGGTTAAGACATGCTGTTGTGGGAAAACAAGGTTGGAGAATGAACGGAAGAGTTGTTTGGATCCGGTACCTACCTGCTCACAAGTATGTGGCAAGCTCCTTCATTGTAGCACGCATCGTTGTAAAGAGCCATGTCATGCTGGGTTGTGTCCACCTTGTATGGTTCTAGTTTCACAGAAATGCCGTTGTGGCTCAACTATCCGAACTGTGGAGTGCTATAGGACTACAATGATGAATGAGAAATTCATGTGTGAAAAGTCTTGTGGGAGAAAAAAGAACTGCGGAAGGCATCGATGTAGTGAAAAGTGTTGTCCACTTTCTAATCCAAATAATAATTTGAGTGGGGATTGGGATCCTCACTTTTGTTCCATGGCATGCGAAAAGAAGCTAAGGTGCGGCCAGCATGTGTGTGAATCTCTGTGTCACAGTGGTCACTGTCCACCTTGTCTCGAAACAATCTTTACTGAATTGACTTGTGCTTGTGGTAGGACATCAATCCTTCCTCCTCTACCTTGTGGTACACCACCTCCTTCATGTCAGCTTCCGTGCTCAGTTCCTCAGCCGTGTGGCCATTCAGGCTCACACAGTTGCCATTTTGGAGACTGCCCTCCTTGTTCAGTGCCTGTAGCAAAACACTGTATTGGCGGGCATGTAGTTCTTAGGAACATACCTTGTGGTTCAAAGGATATCAGATGCAATCATCTCTGTGGCAAGACCAGGCAGTGTGGTTTACATGCATGTGGCAGAACGTGTCACCCCCCACCTTGTGATAATGTATCTGGTGTTGTGCAAGGTTTCAAAGCGCCATGTGGCCAAACATGTGGTGCTCCAAGGAGATGCTGCCGGCACATGTGTATGGCTCCTTGTCACCCTTCATCTCCGTGCCCAGATATAAAATGTGAATTCCCTGTTACTATCACTTGCTCTTGTGGCCGTATAACAGCAAATGTTCCTTGTGATGCTGGTGGTAGCAGTAACAATTATAATGCTGATGCCATACATGAAGCTTCCATTATTCAAACGTTGCCTGTACCACTTCAACCAGTGGATGCAAATGGCAAGAAAGTTCCCCTTGGACAAAGAAAGCTGATGTGTGATGATGAATGTGCCAAGTTGGAACGCAAAAGGGTTCTTGCGGATGCTTTTGACATTACTCCTCCAAGTCTGGATTCACTCCATTTTGGTGAGAACTCTCTTTCTTCTGAATCGCTTTCTGATATCTTCAGGCGTGATCCAAAATGGGTTTTAGCTGTTGAGGAGAGATGCAAAGTTTTAGTACTTGGCAAGAGTAGAGGAATTACACATGGTTTAAAAGTCCACATATTTTGTCCAATGCCAAAGGAGAATAGAGATGCTGTGAGGTCAATCGCTGAAAGATGGAAGCTTGCAATCAATGCCGGTGGCTGGGACCCGAAGCGATTTATTGTTATTTCTGTTACCCCAAAATCAAAGGCCCCAGCTCGTGTGATAGGGGTTAAGGGTACTCCAACTTTAAGTGCGCCCCTTCCTCCGGTATTTGATCCAACAGTTGATATGGACCCACGGCTTGTTGTCTCGTTTCCAGACTTACCAAGGGACGCCGATATTAGTGCCTTGGTGTTGAGGTTTGGTGGCGAGTGTGAGCTGGTTTGGTTGAATGACAAGAATGCTTTGGCTGTTTTTCATGATCCTGCTCGAGCTGCAACTGCAATGAGGAGGTTGGATCACGGAACAGTTTATCAGGGAGCTGTTTTGGTCGCCCCAAATGTTGCATCTTCAGCTACCAATGCCTGGGGAGGAGCTGGGGCAGCAAAAGGAGGAGCGGCGTTAGCATCAACCTCAGCTTCAAGAGGCAACTCATGGAAAAAGGCTGTGGTTCAAGACTCTGATTGGAAAGAAGATTCTTGGGGTGATGAAGGTTTGGCTACTGGTTCTGTCCAGCCATCTGTTTGGAAGAAAGAAGCACCTATAGCTGCTTCTTTAAACCGTTGGAATGTCTTGGAGCATGAGTCTGGTTCGGGTTCAAGTTCGTCCTCATTGACAACCGTTAGAGCTGAAGTCTCTGGGAAGCAAGTTGAAAATAGTGCTGTCTCAACGTTTGTGTCTGGTGCAGGTGGCTCAAATGGAGAAGGAAACTCGGATGCAGCAGAGGTTTCTGAAGTAGTTGATGATTGGGAGAATGCTTATGAGTGA 3552 0.464 MATLTRSIEEETTRMHPGSFRMRDEAFNAIQVSHQIWDSWKHNTHNNKRIIEVSILSSFPHLQEDYRDMSSQLRRERRDGSRVPSQGATRQEWVPRRSAASTTSVQPSNLHSNNNADAGSSNQGVPVAPVTLHRSNHGTHRVESNHGSHRVESNHGPHRAERERERDKGRRSGNQVGRGLSLGVRDSSLPQLVQEIQEKLLKSTVECMICCEMVKRSAPVWSCSSCYAIFHLNCIKIWARAPISGDFSVEKNQGINWRCPGCQFVQLTSSKEIRYVCFCGKRTNPPSDLYLTPHSCGEPCGKPLEREVLVAGSNKDDLCPHSCVLQCHPGPCPPCKAFAPPRLCPCGKKTIATRCSDRRSVLTCGQCCGKLLECERHPCERICHIGPCDPCQVSINASCFCTKTTEVIPCGQMAVKGEIEAKGGVFSCGSYCLKKRSCGNHVCSEYCHPGSCGECELLPSRVKTCCCGKTRLENERKSCLDPVPTCSQVCGKLLHCSTHRCKEPCHAGLCPPCMVLVSQKCRCGSTIRTVECYRTTMMNEKFMCEKSCGRKKNCGRHRCSEKCCPLSNPNNNLSGDWDPHFCSMACEKKLRCGQHVCESLCHSGHCPPCLETIFTELTCACGRTSILPPLPCGTPPPSCQLPCSVPQPCGHSGSHSCHFGDCPPCSVPVAKHCIGGHVVLRNIPCGSKDIRCNHLCGKTRQCGLHACGRTCHPPPCDNVSGVVQGFKAPCGQTCGAPRRCCRHMCMAPCHPSSPCPDIKCEFPVTITCSCGRITANVPCDAGGSSNNYNADAIHEASIIQTLPVPLQPVDANGKKVPLGQRKLMCDDECAKLERKRVLADAFDITPPSLDSLHFGENSLSSESLSDIFRRDPKWVLAVEERCKVLVLGKSRGITHGLKVHIFCPMPKENRDAVRSIAERWKLAINAGGWDPKRFIVISVTPKSKAPARVIGVKGTPTLSAPLPPVFDPTVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTVYQGAVLVAPNVASSATNAWGGAGAAKGGAALASTSASRGNSWKKAVVQDSDWKEDSWGDEGLATGSVQPSVWKKEAPIAASLNRWNVLEHESGSGSSSSSLTTVRAEVSGKQVENSAVSTFVSGAGGSNGEGNSDAAEVSEVVDDWENAYE 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00325 1183 CDD RING-CH-C4HC3_NFX1 206 263 - -
Cca08g00325 1183 MobiDBLite consensus disorder prediction 67 181 - -
Cca08g00325 1183 CDD NF-X1-zinc-finger 296 357 - -
Cca08g00325 1183 CDD NF-X1-zinc-finger 364 412 - -
Cca08g00325 1183 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 164 1179 IPR034078 GO:0003700
Cca08g00325 1183 MobiDBLite consensus disorder prediction 67 83 - -
Cca08g00325 1183 CDD NF-X1-zinc-finger 730 779 - -
Cca08g00325 1183 CDD NF-X1-zinc-finger 582 625 - -
Cca08g00325 1183 MobiDBLite consensus disorder prediction 1123 1167 - -
Cca08g00325 1183 ProSiteProfiles Zinc finger PHD-type profile. 204 265 IPR019787 -
Cca08g00325 1183 CDD NF-X1-zinc-finger 639 687 - -
Cca08g00325 1183 CDD NF-X1-zinc-finger 486 534 - -
Cca08g00325 1183 SMART znfxneu3 592 611 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 SMART znfxneu3 554 588 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 SMART znfxneu3 741 762 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 SMART znfxneu3 649 667 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 SMART znfxneu3 319 337 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 SMART znfxneu3 374 393 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 SMART znfxneu3 438 457 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 SMART znfxneu3 702 732 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 SMART znfxneu3 496 515 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 CDD NF-X1-zinc-finger 692 750 - -
Cca08g00325 1183 ProSiteProfiles Zinc finger RING-type profile. 207 263 IPR001841 -
Cca08g00325 1183 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 164 1179 - -
Cca08g00325 1183 MobiDBLite consensus disorder prediction 136 173 - -
Cca08g00325 1183 CDD NF-X1-zinc-finger 428 473 - -
Cca08g00325 1183 MobiDBLite consensus disorder prediction 84 129 - -
Cca08g00325 1183 Pfam NF-X1 type zinc finger 368 392 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 Pfam NF-X1 type zinc finger 592 609 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 Pfam NF-X1 type zinc finger 438 455 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 Pfam NF-X1 type zinc finger 321 336 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 Pfam NF-X1 type zinc finger 702 717 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 Pfam NF-X1 type zinc finger 496 513 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 Pfam NF-X1 type zinc finger 649 666 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 Pfam NF-X1 type zinc finger 554 565 IPR000967 GO:0005634|GO:0008270
Cca08g00325 1183 MobiDBLite consensus disorder prediction 1123 1183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00325 Cca-Chr8 4768442 4774164 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Cca08g00325 zf-NF-X1 1.5 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00325 K12236 - gmx:100789059 1797.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00325 08 4768442 4774164 Cca08g00325 08 4768442 4774164 ECH