Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00318 ATGCACTTGCATTATTTTTCCAGGAAATCTCTAAGAAAAGCTCAACCAACAAACCACACACGCCAAAACCATCAACTGTCAACTCCTACAATACTCATAGAAAAAGAAAAACGTTACACCATCTTTCATATCAATCACCTAAACATTCTTCTCCTACCAATCAATCATCACACCATGCCTCGCTGCTCCTTTGGCTGCATCTACTGCACAATCTACACCTTAATTTTCATGTTCATGCTCTCCATGATCCTCTTTTGGATAATCATCTCTCCCTCAAATGTCAAGTTCCGTGTAACTGATGCCTCCCTCACACAATTCAACCTCACAAACAAcaacttgtactacaacttcaaggtcaacatcaCAGTGAGAAACCCTAACAACAACATCATAGTTTACTATAGGAGGATCACAGCAATAGCTTGGTACAAGGACAATGAATTTGGTTGGATGAGCTTAACAACCTTTGACCAAGGCCACAAGAACACAACGTTCCTTCATGCAGTGTTTGAAGGGCATAGTGTGCTTAAGCTCAAAGCTAAACAACTTGGTGAGTACAAAGAGGAGACAAGTGTTGGGGTTTATGAGGACTTGGCTGTGGATTTGGACCTTAGAATAAGAACCAAGTATGGAAGGTTCAAGAGTGGTCGTTTCAATCCACCCGTTGTTCAGTGTGGCAGCTTGAGGGTTCCTTTGATTTCTAGTGGCAAAATAGCACCTCCTTTTAGTGTCAAGAAATGCAGCACTGGTTCTTTCTTTGTGGATCGTGATGCTGAATCAGGGTGA 786 0.402 MHLHYFSRKSLRKAQPTNHTRQNHQLSTPTILIEKEKRYTIFHINHLNILLLPINHHTMPRCSFGCIYCTIYTLIFMFMLSMILFWIIISPSNVKFRVTDASLTQFNLTNNNLYYNFKVNITVRNPNNNIIVYYRRITAIAWYKDNEFGWMSLTTFDQGHKNTTFLHAVFEGHSVLKLKAKQLGEYKEETSVGVYEDLAVDLDLRIRTKYGRFKSGRFNPPVVQCGSLRVPLISSGKIAPPFSVKKCSTGSFFVDRDAESG 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00318 261 PANTHER OS05G0367900 PROTEIN 73 252 IPR044839 GO:0098542
Cca08g00318 261 Pfam Late embryogenesis abundant protein 120 218 IPR004864 -
Cca08g00318 261 PANTHER HARPIN-INDUCED 1 73 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00318 Cca-Chr8 4675944 4676816 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00318 88 232 SNARE and Associated Proteins AT1G32270 33.562 3.86e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00318 - - gmx:100784278 309.686