Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00316 ATGCCATTGATTCACACTACTCACTATGCCATTCCTTCCTTCACCACAGTTACCAATGCACCATCTCTCTCTGTTGCCGCCACATTCGCTTCCAATTTTCACCGCAAAATCCATAACCCAATTTTCGGGTTTTCCACCACCGCCAGGAATCGCTCGCGCGCTGCGGTGATTAGAGCCAAAGCAGGGACCGATTACTATTCCACCTTGAACGTTAGCCCCAATGCCACGCTGCAGGAAATCAAGGCCTCCTATCGCAAACTGGCGCGCAAGTACCATCCAGATATGAATAAGAATCCTGGGGCTGAGGAGAGGTTTAAGGAAATAAGTGCTGCATATGAGGTCCTATCAGATGATGAGAAAAGATCTTTATATGATCGCTTTGGTGAGTCAGGTCTACAAGGAGAAAATGGAGGTTCAACTGGTGCTCCAGGGGTTGATCCTTTTGATTTATTCAATGCATTCTTTGGTCAATCTGAAGGACTATTTGGAGATGGTGATGAAGGGGGCATCAACTTCAATTTTAGAAACAATAGAAATCGTGGTCGTGATATTAGATATGACCTTCATTTGAGCTTTGAAGAATCAATATTTGGAGCACAGAGGGAGATTGAAGTTTCCGGTTTTCAGACATGCAATACATGTGATGGTACAGGAGCTAAATCAAAGAAATGCATTAAACAATGCACAAATTGTGGTGGCAGAGGGGGAGAAATGAAAAGTCAGAGAACACCCTTTGGAATGATGTCTCAGGTTTCTACCTGCTCCAAGTGTGGTGGCCTTGGCAAAATAATAACTGAGCACTGTCAAAGATGTGATGGCAGTGGTCAGATTCAATCTAAACAAACAATGGAAGTGGAAATTCCTCCTGGAGTCAGTGATGGAGACACAATGCAAATTCGAGGACAAGGGAATTTTGATAAAAAGAGGCAAATTACTGGGGATCTTTTTGTTGTCCTGCATATAGATGAGAAACAAGGAATTTGGAGAGAGGGCCTTCATTTGTACTCAAAGATTAGCATTGACTTCACGGATGCAATATTGGGTTCAGTTAAAAAGGTAGAAACTGTTGAAGGTTTACGGGATCTTCAAATTCCTTCAGGGATTCAACCTGGAGATTCAGTGAAGTTGTCACGTTTGGGGGTTCCAGACATGAATAAACCATACGTTCGGGGCGATCATTACTTCATTGTGAATGTTCTTATTCCCAAGGATATCAGTGGCACAGAACGTGTACTTGTTGAGCAGTTAGCTTCATTGAGAGCATCTTGCAAAGGGGATTCACCGTCTTCCAATGGCATTGGGATACCTAAAGAAAAACTCAATGAATTCATAAAGAAGCATTCAAAAGGTGATGCTTCAAGCAAGGGAATAAAAAATGTTGGCTCTCTTTGTCTTTGGGGATCAATCAAGAACTTCTTGAGGGGAGGACAGTCGGAAGAAAGATTTGCTTCAATTAGTATGGACATGTCAGCATTATTTCGGAGTTCTCGCCACCAAAGTCCTTCTGTCCCTGAATCATTTTTTGTTGTTTTCATTATAACTTGGATTTTCATCTCTATAGCAAAGTCTAAGTACTCAATACTTCAGAAAAGATCCGAGTTCTTCTCTAATAGAACACTGAAAAAAAATTAA 1632 0.4167 MPLIHTTHYAIPSFTTVTNAPSLSVAATFASNFHRKIHNPIFGFSTTARNRSRAAVIRAKAGTDYYSTLNVSPNATLQEIKASYRKLARKYHPDMNKNPGAEERFKEISAAYEVLSDDEKRSLYDRFGESGLQGENGGSTGAPGVDPFDLFNAFFGQSEGLFGDGDEGGINFNFRNNRNRGRDIRYDLHLSFEESIFGAQREIEVSGFQTCNTCDGTGAKSKKCIKQCTNCGGRGGEMKSQRTPFGMMSQVSTCSKCGGLGKIITEHCQRCDGSGQIQSKQTMEVEIPPGVSDGDTMQIRGQGNFDKKRQITGDLFVVLHIDEKQGIWREGLHLYSKISIDFTDAILGSVKKVETVEGLRDLQIPSGIQPGDSVKLSRLGVPDMNKPYVRGDHYFIVNVLIPKDISGTERVLVEQLASLRASCKGDSPSSNGIGIPKEKLNEFIKKHSKGDASSKGIKNVGSLCLWGSIKNFLRGGQSEERFASISMDMSALFRSSRHQSPSVPESFFVVFIITWIFISIAKSKYSILQKRSEFFSNRTLKKN 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00316 543 CDD DnaJ 64 117 IPR001623 -
Cca08g00316 543 ProSitePatterns Nt-dnaJ domain signature. 105 124 IPR018253 -
Cca08g00316 543 Pfam DnaJ C terminal domain 184 402 IPR002939 -
Cca08g00316 543 Gene3D DnaJ domain 61 164 IPR036869 -
Cca08g00316 543 Hamap Chaperone protein DnaJ [dnaJ]. 61 460 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Cca08g00316 543 Pfam DnaJ domain 64 125 IPR001623 -
Cca08g00316 543 Gene3D - 181 317 - -
Cca08g00316 543 SMART dnaj_3 63 120 IPR001623 -
Cca08g00316 543 PANTHER EXPRESSED PROTEIN 70 424 - -
Cca08g00316 543 ProSiteProfiles Zinc finger CR-type profile. 198 280 IPR001305 GO:0031072|GO:0051082
Cca08g00316 543 Gene3D - 328 419 - -
Cca08g00316 543 SUPERFAMILY HSP40/DnaJ peptide-binding domain 183 321 IPR008971 GO:0006457|GO:0051082
Cca08g00316 543 SUPERFAMILY HSP40/DnaJ peptide-binding domain 329 409 IPR008971 GO:0006457|GO:0051082
Cca08g00316 543 SUPERFAMILY Chaperone J-domain 61 166 IPR036869 -
Cca08g00316 543 Gene3D - 211 275 - -
Cca08g00316 543 PRINTS DnaJ domain signature 66 84 IPR001623 -
Cca08g00316 543 PRINTS DnaJ domain signature 84 99 IPR001623 -
Cca08g00316 543 PRINTS DnaJ domain signature 100 120 IPR001623 -
Cca08g00316 543 PRINTS DnaJ domain signature 120 139 IPR001623 -
Cca08g00316 543 CDD DnaJ_C 183 405 - -
Cca08g00316 543 CDD DnaJ_zf 211 275 IPR001305 GO:0031072|GO:0051082
Cca08g00316 543 Pfam DnaJ central domain 211 275 IPR001305 GO:0031072|GO:0051082
Cca08g00316 543 ProSiteProfiles dnaJ domain profile. 64 128 IPR001623 -
Cca08g00316 543 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 198 278 IPR036410 -
Cca08g00316 543 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 70 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00316 Cca-Chr8 4658227 4669819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00316 65 125 C2H2 Transcription Factor Family AT1G74250 41.791 5.86e-07 50.4