Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00315 ATGCAACTCTTATTCATCATTCTCATCGCCTTCGTCTTACCTCCAGCCTTCTCCGACCTCTCGTCGGAGCGCGCCGGGCTCCTCACCCTCCGCGCCGCCCTGCGCGGCCGCACCCTCCTCTGGAATGCCACCTCGCCGTCACCCTGCGCCTGGCCCGGCGTCTACTGCGACGCCGCCAACGCCACCGTCGTCGGCCTCCACCTCCCCGCCGTCGCCCTCTCCGGCCACCTCCCCTCCGGCGTCTTCCCGGCGCTCCCCCGCCTCCGCACCCTCAGCCTCCGCGTCAACCTCCTCTCCGGCACCCTCCCCGCCGACCTCGCCGCCTGCTCCGCCCTTCGCAACCTGTTCCTCCAGCGGAACAACTTCTCCGGCGAGGTCCCGCCGTTCCTCTCCACCATGACCACCCTTGTCCGCCTCAACTTGGCCTCAAACAGCTTCTCCGGTTCGGTTCCGGCCCGGTTCGGGAACCTGACCCAGCTGAGGACCCTTTTCCTTGAGAACAACCGGTTCACCGGTTCGCTACCCGGTTTGGAAGAACTCAACGAGCTGGCTCAGTTTAATGTCTCTTACAACATGTTAAACGGTTCCGTTCCTAAAAAGTTGCAAGCTTTTGGTGAAGACTCGTTTTTGGGGAATGCCCTTTGTGGGAAGCCCCTTGGGATTTGTCCTTGGGATGATGGTGGTGGTGAGAATGGTGCAAATGGGACTTCAAATCCAAGTGGGGTTGGAGGGAATGTGATTGATGGAGAAAGGAAGAAGAAGGGGAAGCTTTCTGGGGGTGCAATTGCTGGGATTGTTGTTGGGAGTGTGGTGGTTCTTTTGTTGGTTGTGTTTGCTTTGATTCTCTTGTGTAGAAGTGGGAACAAGACTAGGAGTGATGATAATGCTAATACCATGGTGGGGTTCAAGCAGGAGGAGGAGCAGCATGGGGAGGTGGGAGTTGAGGGGGGCAATgtggagagtagtggtagtggtggtggtgggaattcggtggctgcggccgcagttgcagccgcagcagtgagtggtggtggcggtggtggtggAGATAAGAAGTTGGTGTTTTTTGGTAATTCAGTGAAGGTGTTTGATTTGGAGGATTTGCTTAGGGCTTCTGCTGAGGTGTTGGGGAAAGGGACGTTTGGGACAACTTATAAGGCTGTTTTGGAGGATGGGCCTGTGGTGGCTGTGAAGAGGTTGAAGGATGTGACGGTTTCTGAGAAGGAGTTCAAGGAGAAGATTGATGTGGTGGGAGTGATGGATCATGAGAATTTGGTGCCTCTCAGGGCTTACTATTATAGCAGGGAGGAGAAGCTTCTTGTTCATGATTACCTGCCAATGGGAAGCTTATCTGCAATTTTGCATGGAAACAAAGGAGCTGGTAGGATACCATTGAATTGGGAAATGAGATCAGGCATTGCTCTGGGAGCTGCTCGCGGCATAGAGTACCTACATTCACAAGGGCCAAGTGTTTCTCATGGAAACATAAAGTCCTCCAACATCCTCCTAACCAAGTCCTACGATGCCAGGGTGTCTGATTTTGGCCTAGCACACCTTGTTGGCCCCTCATCCACACCCAACCGGGTCGCCGGCTACCGCGCTCCAGAAGTAACCGATCCACGCAGAGTGTCTCAGAAGGCTGATGTATACAGCTTTGGAGTGTTGCTTTTGGAACTTCTGACTGGAAAGGCTCCTACACATGCCCTCTTGAATGAGGAAGGAGTGGACCTTCCAAGATGGGTGCAATCAGTGGTTAGAGAAGAGTGGAGTTCTGAGGTGTTTGACATTGAGCTACTTAGGTATCACAATTCTGAAGAGGAGATGGTTCAGTTGTTGCAACTAGCGGTGGATTGTGCAGTTCCATACCCTGATAATCGCCCTTCAATGTCTCAAGTGAGACAACGCATAGAAGAGTTACGTGGTTCTTCTGGCATGAAAGAAGATGCTCAAGACCAAATCCAACAACTTGATTCGATCAATGATATATATCATGCATCCTCTAGATGA 2007 0.5047 MQLLFIILIAFVLPPAFSDLSSERAGLLTLRAALRGRTLLWNATSPSPCAWPGVYCDAANATVVGLHLPAVALSGHLPSGVFPALPRLRTLSLRVNLLSGTLPADLAACSALRNLFLQRNNFSGEVPPFLSTMTTLVRLNLASNSFSGSVPARFGNLTQLRTLFLENNRFTGSLPGLEELNELAQFNVSYNMLNGSVPKKLQAFGEDSFLGNALCGKPLGICPWDDGGGENGANGTSNPSGVGGNVIDGERKKKGKLSGGAIAGIVVGSVVVLLLVVFALILLCRSGNKTRSDDNANTMVGFKQEEEQHGEVGVEGGNVESSGSGGGGNSVAAAAVAAAAVSGGGGGGGDKKLVFFGNSVKVFDLEDLLRASAEVLGKGTFGTTYKAVLEDGPVVAVKRLKDVTVSEKEFKEKIDVVGVMDHENLVPLRAYYYSREEKLLVHDYLPMGSLSAILHGNKGAGRIPLNWEMRSGIALGAARGIEYLHSQGPSVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRRVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWSSEVFDIELLRYHNSEEEMVQLLQLAVDCAVPYPDNRPSMSQVRQRIEELRGSSGMKEDAQDQIQQLDSINDIYHASSR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00315 668 MobiDBLite consensus disorder prediction 306 325 - -
Cca08g00315 668 SUPERFAMILY L domain-like 41 201 - -
Cca08g00315 668 Gene3D Transferase(Phosphotransferase) domain 1 445 664 - -
Cca08g00315 668 ProSitePatterns Protein kinases ATP-binding region signature. 376 398 IPR017441 GO:0005524
Cca08g00315 668 ProSiteProfiles Protein kinase domain profile. 370 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00315 668 Pfam Protein kinase domain 373 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00315 668 ProSiteProfiles Leucine-rich repeat profile. 159 181 IPR001611 GO:0005515
Cca08g00315 668 Pfam Leucine rich repeat N-terminal domain 21 57 IPR013210 -
Cca08g00315 668 SUPERFAMILY Protein kinase-like (PK-like) 374 636 IPR011009 -
Cca08g00315 668 CDD STKc_IRAK 376 639 - -
Cca08g00315 668 Gene3D Phosphorylase Kinase; domain 1 349 444 - -
Cca08g00315 668 Gene3D Ribonuclease Inhibitor 177 225 IPR032675 -
Cca08g00315 668 Gene3D Ribonuclease Inhibitor 20 176 IPR032675 -
Cca08g00315 668 PANTHER OS05G0588300 PROTEIN 4 668 - -
Cca08g00315 668 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00315 Cca-Chr8 4646710 4650103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00315 19 657 Receptor kinase-like Gene Family AT1G48480 59.161 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca08g00315 Pkinase 1.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00315 - - gmx:100781597 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00315 08 4646710 4650103 Cca09g02843 09 54017902 54021192 ECH
Cca08g00315 08 4646710 4650103 Cca08g00315 08 4646710 4650103 ECH
Cca09g02843 09 54017902 54021192 Cca08g00315 08 4646710 4650103 PCT