Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00313 ATGCAGTGGTCATTCCCACACAAGGTCTCAGTCCTTCCTCAGTTCCTGTCCTTCAAGACCAATCAGGAAGACAGGCCTAGGATGAATATTCTTGATCCACTAGCTTCATCTGGATATATGACCATGGCAACTAAAGATGCTTTTGACTCTAACCAGAAACCATTCTTTGGTGCCACCCAGAAAAATTTGTCCATAAGCAAGCATGCTGCAGGAACCAAACATGGAATGGCAGTTTATCCTATGCAATGTAGTGATGCACAATCAGCGTGCCTTCAGGAAGCAAGAATATTTTCAGTTTCCAACCAATCAAATCAAGTTAGTCCTGTTCTTCAATCTAATCTTGCTACTAGCGGACTGAACATGACCAATTCAGTCATAAAACCACAACCTCTTGGTTCCAAATCCTCTGGCACACCTCTATCTGTTCTTCCATCAATAGGTTCCATTGTTGGATCTACTGACTTAAGGAATTGTTCCAAATCCTCTGGCATGTCTACTCAGCTGACCATTTTCTATGGCGGTTCTGTATGTGTTTATGATGACATATCTCCTGAGAAGGCCAAGGCTATCATGTTAATGGCTGGAAATGGGTCTAATCCAACTCACAAAATGGCAGTTTCCACAAATAAATTGCATCCAGCAATCTCAATTCCCTCCAAAGATGATGGTTTCATTATAAGCCAATCCTATCCTCCCTCTCAAGCTAATTCTCAGCCAGGAGGATCTTCTAGCAACAATGAACTTGCCATATTAAGACCAGTAGGACCTTCAACTGCCCCTACTAACCATTTAGAATCACCTATTATTGTTGGTTCTGTAGCTAAAGAAAGGGCTCAACCAGTATGCTTGCCTCAGGCACGTAAAGCATCCTTGGCTCGGTTTATGGAGAAGAGAAAAGAAAGGATGATGAACATATCACCATACTTTTATATGAGCAAGAAATCACCTGAATGCAGCTCTTCTGGATCAGACAGTGTCAGTTTCTCCTTGAATTTCTCTGGTTCCTGCTCTTTACCAACCACCAACTAG 1029 0.4218 MQWSFPHKVSVLPQFLSFKTNQEDRPRMNILDPLASSGYMTMATKDAFDSNQKPFFGATQKNLSISKHAAGTKHGMAVYPMQCSDAQSACLQEARIFSVSNQSNQVSPVLQSNLATSGLNMTNSVIKPQPLGSKSSGTPLSVLPSIGSIVGSTDLRNCSKSSGMSTQLTIFYGGSVCVYDDISPEKAKAIMLMAGNGSNPTHKMAVSTNKLHPAISIPSKDDGFIISQSYPPSQANSQPGGSSSNNELAILRPVGPSTAPTNHLESPIIVGSVAKERAQPVCLPQARKASLARFMEKRKERMMNISPYFYMSKKSPECSSSGSDSVSFSLNFSGSCSLPTTN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00313 342 Pfam tify domain 165 195 IPR010399 -
Cca08g00313 342 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 233 342 - -
Cca08g00313 342 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 1 232 - -
Cca08g00313 342 SMART tify_2 161 196 IPR010399 -
Cca08g00313 342 Pfam Jas motif 284 308 IPR018467 -
Cca08g00313 342 ProSiteProfiles Tify domain profile. 161 196 IPR010399 -
Cca08g00313 342 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 233 342 IPR040390 -
Cca08g00313 342 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 232 IPR040390 -
Cca08g00313 342 MobiDBLite consensus disorder prediction 226 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00313 Cca-Chr8 4594990 4599175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00313 1 326 Tify Gene Family AT3G17860 38.177 1.08e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Cca08g00313 tify 3.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00313 K13464 - gmx:100807288 504.212