Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00299 ATGGGTGTCTCAGGGAAGTGGATTAAGGCATTGGTGGGTCGAAAGAAATCAGAAAAGCCAGACTCGTTAGAGAAGGATGGGATTGGAAATAAGGTTAGCAAGTATCGTGATCAGAAAAAGCATTCTGTCGAATTTGATGATGGTAAACTTCCTAACGAATTTGATAGTGATGCTACTCAACCTACTGGAGACAACAATGGACATACAAACACTGATGCACATTGCTCACCTTCTACCTCACAACAAGCACATGATGCCGATCATAATCATCAAAATAGGCAGGAATGGGCTGCAATACGCATTCAAACAGCATTTCGAGGATTTCTGGCCAGAAGAGCACTACGAGCTTTGAAAGGAGTGGTAAAACTTCAGGCCCTTGTAAGAGGCTATGCAGTGAGAAAACAAGCTGCAATAACACTCCGTTGCATGCAAGCTCTGGTAAGGGTTCAGGCTCGAGTTCGGGCAAGGCATGTTCGCATGTCATTGGAAACTCAAGCAGCACAACAGAAACTTCAGCAAAAGCTTCCAAACAAAGTTCAAGTTCGAGAAATAGAAGAAGGATGGTGTGATAGTGTAGGATCTGTTGAAGAAATTCAGACTAAAATATTGAAGAGGCAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTTTAGCTCATCAGTGGCAGGCAGGATCAAGGCAACAGCCTGTTTCCTCTGGATTTGAACCAGATAAAAGTAGCTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTCCGTCCTTGGGAGAATCGCTTCGTTGACATTAATCTGAGGCATGGATTAATGATGCATGAAAATGGAGCTAAGGATGGTCAAAATGGAACAGCACATCAGTTAAGACCTGCTAACAATAACAAGAAACCATTTTCATCGAACTTGCATCCGCTCCCTGCAAGTCAGAGAACTGGTCCCATTCTTTCCAATGGATGTGATTCTTCACCTGCACCAAGTAAGTCAGCAGGTTCGGTAGAAACATCAGACACACAGCCTGTCAAGCCAAATTTTAAAGCAGATGTTGAAAATGTTGTTGAAGAAGCTAACTTAAAACCTGGAATTCAATCAAGATCTCATTCAAACCCCAAGGAAAGAACATCACAGGCAGATAAGAAGGCCAAAAATCGATTATCTCTGCCAAACAATGGGAGTGGTCCTAGATCTCAAACAACCAGACTTCCTATTGGAACTAATGTGAAAGGGACGCTAAGCACACAAAAAGCTGGCAGGGATAAGCCTAAGCCCAATAGAGGAAAAGATGTGAATATTACAAAACCAGTTCCATAG 1311 0.4325 MGVSGKWIKALVGRKKSEKPDSLEKDGIGNKVSKYRDQKKHSVEFDDGKLPNEFDSDATQPTGDNNGHTNTDAHCSPSTSQQAHDADHNHQNRQEWAAIRIQTAFRGFLARRALRALKGVVKLQALVRGYAVRKQAAITLRCMQALVRVQARVRARHVRMSLETQAAQQKLQQKLPNKVQVREIEEGWCDSVGSVEEIQTKILKRQEAAAKRERAMAYALAHQWQAGSRQQPVSSGFEPDKSSWGWNWLERWMAVRPWENRFVDINLRHGLMMHENGAKDGQNGTAHQLRPANNNKKPFSSNLHPLPASQRTGPILSNGCDSSPAPSKSAGSVETSDTQPVKPNFKADVENVVEEANLKPGIQSRSHSNPKERTSQADKKAKNRLSLPNNGSGPRSQTTRLPIGTNVKGTLSTQKAGRDKPKPNRGKDVNITKPVP 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00299 436 MobiDBLite consensus disorder prediction 55 85 - -
Cca08g00299 436 ProSiteProfiles IQ motif profile. 118 145 IPR000048 GO:0005515
Cca08g00299 436 PANTHER IQ-DOMAIN 5-RELATED 2 394 - -
Cca08g00299 436 ProSiteProfiles IQ motif profile. 94 122 IPR000048 GO:0005515
Cca08g00299 436 MobiDBLite consensus disorder prediction 276 344 - -
Cca08g00299 436 SMART iq_5 93 115 IPR000048 GO:0005515
Cca08g00299 436 SMART iq_5 116 137 IPR000048 GO:0005515
Cca08g00299 436 MobiDBLite consensus disorder prediction 11 53 - -
Cca08g00299 436 MobiDBLite consensus disorder prediction 1 91 - -
Cca08g00299 436 Gene3D - 94 136 - -
Cca08g00299 436 MobiDBLite consensus disorder prediction 381 413 - -
Cca08g00299 436 Pfam IQ calmodulin-binding motif 118 135 IPR000048 GO:0005515
Cca08g00299 436 Pfam IQ calmodulin-binding motif 96 115 IPR000048 GO:0005515
Cca08g00299 436 MobiDBLite consensus disorder prediction 356 436 - -
Cca08g00299 436 ProSiteProfiles IQ motif profile. 143 170 IPR000048 GO:0005515
Cca08g00299 436 MobiDBLite consensus disorder prediction 281 342 - -
Cca08g00299 436 PANTHER IQ-DOMAIN 5-RELATED 2 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00299 Cca-Chr8 4372929 4378045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00299 1 400 IQD Protein Family AT3G22190 54.342 8.44e-118 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00299 - - gmx:100787148 674.855