Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00298 ATGGATCGTAACAAAAAGGGTGCACCGGAGGTAGAGTTTTTTACCGAGTATGGAGAGGCAAGTAGGTATGAGATCAATGAAGTGATTGGCAAAGGGAGTTACGGTGTTGTGTGTTCTGCTGTTGATACTCATACTGGGGAAAAAGTTGCAATTAAGAAAATCCATGATGTTTTTGAGCATGTGTCGGATGCCACGCGGATCGTAAGAGAAATCAAACTCCTTCGCTTGCTCCGACATCCTGATATAGTTGAAATTAAGCATATAATGTTTCCCCCCTCACGACGAGAGTTCAAGGATGTCTATGTTGTGTTTGAGTTGATGGAGTCTGACCTTCATCAAGTAATTAAGGCAAATGATGATCTTACTCCTGAGCACTACCAATTTTTCTTGTACCAACTTCTTCGTGGCCTGAAATTTATACATTCAGCTAATGTGTTTCATCGTGACTTGAAGCCAAAAAATATTCTAGCTAATGCTGATTGCAAGCTAAAAATATGTGATTTTGGGCTTGCTCGAGTTTCATTTAATGAGGCTCCATCAGCTATATTCTGGACCGACTATGTTGCAACTCGGTGGTATCGTGCACCTGAGCTATGTGGTTCTTTTTTCTCAAAATATACCCCCGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTTAATGGGAAGCCATTGTTTCCTGGAAAAAATGTAGTGCACCAATTGGATCTTATAACTGACCTGCTTGGTACTCCTCCTGATGAAACCGTTTCCAAGATTCGAAATGAGAAGGCTAGAAGGTACCTTAGTAGCATGCGGAAAAAGCAACCCATTCCGTTCTCCAAAAAATTTCCAAATGCAGATCCATTGGGTCTTCATTTGCTGGAGCGATTACTTGCATTTGATCCTAAAGATCGTCCAGAAGCTGAAGAGGCACTAAGTGATCCTTATTTCAATGGTTTGGCAAATGTTGACCGTGAACCGTCCACTCAACCCATTTCAAAGCTTGAGTTTGAGTTTGAGAGAAGAAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGTGAGATTTTAGAGTATCATCCTCAGATGCTCGAAGAATATCTCCGTGGTGGAGAACAAACAAGCTTCATGTATCCAAGTGGAGTTGATCGATTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGATCGAAGTGGTGAACGAAGCACTCCATTGTTGAGGCAGCACGCCTCCTTACCTAGAGAGCGAGTTCCTGCTCCCAAGGATGAAAATGATCAAAACAACGAAAATGCTGGAGCAAATCTTCAGAGTCCTCCAGGGTCTGAATCAATAGATTCTGGAAACTCAGATGCACAAAATGGACCCTCCAGGCCAAACTGCAGTGCACGCAGCCTGTTGAAGAGTGCCAGCATTAGTGGTTCAAAGTGTATAGGAGTGAAACAAAATAAAGATTCAGAGGAGGAGGAGCCACTTACAGAGGTCAATGATGAGACTCTGGATGAGTTGACACAGAAGGTTGCTTCCCTCCATGCTTAG 1542 0.4248 MDRNKKGAPEVEFFTEYGEASRYEINEVIGKGSYGVVCSAVDTHTGEKVAIKKIHDVFEHVSDATRIVREIKLLRLLRHPDIVEIKHIMFPPSRREFKDVYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKFIHSANVFHRDLKPKNILANADCKLKICDFGLARVSFNEAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLNGKPLFPGKNVVHQLDLITDLLGTPPDETVSKIRNEKARRYLSSMRKKQPIPFSKKFPNADPLGLHLLERLLAFDPKDRPEAEEALSDPYFNGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLEEYLRGGEQTSFMYPSGVDRFKRQFAHLEEHYGKGDRSGERSTPLLRQHASLPRERVPAPKDENDQNNENAGANLQSPPGSESIDSGNSDAQNGPSRPNCSARSLLKSASISGSKCIGVKQNKDSEEEEPLTEVNDETLDELTQKVASLHA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00298 513 Pfam Protein kinase domain 23 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00298 513 ProSiteProfiles Protein kinase domain profile. 23 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00298 513 MobiDBLite consensus disorder prediction 394 513 - -
Cca08g00298 513 CDD STKc_TDY_MAPK 22 359 - -
Cca08g00298 513 SUPERFAMILY Protein kinase-like (PK-like) 18 319 IPR011009 -
Cca08g00298 513 Gene3D Transferase(Phosphotransferase) domain 1 109 337 - -
Cca08g00298 513 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 433 - -
Cca08g00298 513 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 433 - -
Cca08g00298 513 MobiDBLite consensus disorder prediction 426 481 - -
Cca08g00298 513 SMART serkin_6 23 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00298 513 ProSitePatterns Protein kinases ATP-binding region signature. 29 53 IPR017441 GO:0005524
Cca08g00298 513 Gene3D Phosphorylase Kinase; domain 1 38 360 - -
Cca08g00298 513 ProSitePatterns MAP kinase signature. 58 161 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00298 Cca-Chr8 4364864 4371187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00298 8 513 MAP Kinase Gene Family AT3G18040 79.767 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Cca08g00298 Pkinase 3.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00298 - - gmx:100787677 925.235