Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00296 ATGGACCCCTCCTCGATCCCTCCACCGTCCGTTCCGCCGCCCACCGCCGTGCCTTTCCCGGCCGAGCCCAACGACCACCCGCCTCCTCCGGACCCTCCCGCCAACCACCCTCCCTACGCCGAGATGATATACACGGCAATCGAGGCGTTGAAGGAGAAGAACGGTTCGAGCAAGAGAGCAATAGGGAAGTACATAGAGCAAGTGTACAAGGACCAGCTTCCACCCAATCACTCCACCTTGTTGACTCACCACTTGAATCGTTTGAAGACCACGGGACTGCTCCAAATGGTCAAAAAATCCTATGCTCTCCCTAGATCTGCGCCCCTACCTGGACTCGCGCCTCAACCGCTTCCGCCTGGGGGTTCTCCCAGGCCCAGAGGCCGTCCCCGCAAGGCCCAGAATCCCGAAACCGCTAATGTTCAGCAGAATGCTGAACCCGTCTGGGCCGCGCTTGGGCTCGCGGACGAGCCCTTGCAGGCTGAGAGCGGCAAGAAGCGCCCGGGCCGTCCCAAGAAGAACGCGGTTCCCGGAGCGGGTCCGTCCCGGAGAGGCCGGCCTCCGGGCTCCGTGAAGAGGCCCGGCCGTCCTCCCAAGGCTAAGACCGACACCGCCGAGGCTTCCGTTGGGCCGAAGAGAGGCCCGGGCCGTCCGCCCAAGAACCAGACGCAGGCGACTCCGATTCCCTTTGCTCAGCCCGCGGGTGCGGACCCCGTGGCTGAACCGGTtgctgccgctgctgatgctggggctgtgctTGGGCCCAGGGCCCGCGGACGGCCCAAGAAGTACGCTGATGAGGTTGTTGCTGCGGGCCGAGGCAGGGGAAGGGGTCGTGGTCGCGGTGGCCGGGGACGAGGGAGAGGGCGCGGGGGATTACCTGCGCCGCCCAGACCCGGGGCTAGGCCTGTGGGCCGTCCGAAGAAGGGCTCAACTTATGCTAGTACTTCACAAAATGCTGCTAATGATGATCTGAGGAGGAAACTTGAACACTTCCAATCAAAAGTGAAGGAATCTTTGGCAGTGCTTAAGCCTCATTTTAACCATGAAAGTCCAGCCACTGCAATTGCAGCTATTCAAGATTTGGAAGAACTTGGAATCATGGACCTCAATGCACCACTGAGGGATGAAACACTTCCACACCAAGAGGAGCTGCCACCACCACAGCCACCCGTGCAGCCACAGCAGCTGCAGCTACCACGGCAACAGCTTCCACCACCACCACAACAGCAGCAGCAGCCACCACAGCAAAATCTACCACCACAACAACTGCCACCACAGGCACCTATATTTCCACAAGATTTTCCTGCGTTCCATCTGCAGCCATTCcagcagcatctgcagttccagcaacagcagcagccacagccaccacagctattccagccaccgcctcagcaccaccaacagTTTCATCCTTAG 1419 0.5567 MDPSSIPPPSVPPPTAVPFPAEPNDHPPPPDPPANHPPYAEMIYTAIEALKEKNGSSKRAIGKYIEQVYKDQLPPNHSTLLTHHLNRLKTTGLLQMVKKSYALPRSAPLPGLAPQPLPPGGSPRPRGRPRKAQNPETANVQQNAEPVWAALGLADEPLQAESGKKRPGRPKKNAVPGAGPSRRGRPPGSVKRPGRPPKAKTDTAEASVGPKRGPGRPPKNQTQATPIPFAQPAGADPVAEPVAAAADAGAVLGPRARGRPKKYADEVVAAGRGRGRGRGRGGRGRGRGRGGLPAPPRPGARPVGRPKKGSTYASTSQNAANDDLRRKLEHFQSKVKESLAVLKPHFNHESPATAIAAIQDLEELGIMDLNAPLRDETLPHQEELPPPQPPVQPQQLQLPRQQLPPPPQQQQQPPQQNLPPQQLPPQAPIFPQDFPAFHLQPFQQHLQFQQQQQPQPPQLFQPPPQHHQQFHP 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00296 472 CDD H15 39 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca08g00296 472 PRINTS Histone H5 signature 22 43 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca08g00296 472 PRINTS Histone H5 signature 49 66 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca08g00296 472 PRINTS Histone H5 signature 130 144 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca08g00296 472 PRINTS Histone H5 signature 194 213 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca08g00296 472 MobiDBLite consensus disorder prediction 370 472 - -
Cca08g00296 472 SMART AT_hook_2 300 312 IPR017956 GO:0003677
Cca08g00296 472 SMART AT_hook_2 164 176 IPR017956 GO:0003677
Cca08g00296 472 SMART AT_hook_2 254 266 IPR017956 GO:0003677
Cca08g00296 472 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Cca08g00296 472 SMART AT_hook_2 211 223 IPR017956 GO:0003677
Cca08g00296 472 SMART AT_hook_2 190 202 IPR017956 GO:0003677
Cca08g00296 472 MobiDBLite consensus disorder prediction 1 37 - -
Cca08g00296 472 SUPERFAMILY "Winged helix" DNA-binding domain 30 107 IPR036390 -
Cca08g00296 472 Pfam linker histone H1 and H5 family 36 98 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca08g00296 472 MobiDBLite consensus disorder prediction 105 329 - -
Cca08g00296 472 PANTHER HISTONE H1-LIKE 16 379 - -
Cca08g00296 472 MobiDBLite consensus disorder prediction 382 431 - -
Cca08g00296 472 Gene3D - 32 109 IPR036388 -
Cca08g00296 472 PANTHER HISTONE H1 16 379 - -
Cca08g00296 472 PRINTS AT-hook-like domain signature 211 221 IPR017956 GO:0003677
Cca08g00296 472 PRINTS AT-hook-like domain signature 252 263 IPR017956 GO:0003677
Cca08g00296 472 PRINTS AT-hook-like domain signature 298 308 IPR017956 GO:0003677
Cca08g00296 472 MobiDBLite consensus disorder prediction 258 273 - -
Cca08g00296 472 MobiDBLite consensus disorder prediction 1 39 - -
Cca08g00296 472 MobiDBLite consensus disorder prediction 109 125 - -
Cca08g00296 472 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 35 105 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca08g00296 472 SMART h15plus2 33 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00296 Cca-Chr8 4298337 4304155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00296 42 145 Single Myb Histone (SMH) Gene Family AT1G49950 34.286 5.70e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00296 - - gmx:100788215 410.609