Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00295 ATGCCTTCCCTTGTAGATCTGCAACTGCAAGGAACATCAATATCGGGTAGTGGCAGATGGGAAGCTGTCTTGGTCAATAGGGTTGCTGATTCTAATTTGTTGAAACTTGTGCAAAAGGCTCAGGACTTGACTGGAAAATCAAGCCCCGATTTTGAAGTAGTTATAGATAGCAATGTGGTGCACAAGCTTGCAATATTTGTTGCTGATTATATGGGAGGACCTGTTGGAGATCCTGAAAGCATGACAAGAGCATGGAGGAGTCTTAGTTACAGTCTGAAAGCAACCGTTGGTAGCATGATTTTGCCACTTGGTTCTTTAACTATTGGATTGGCTCGGCATCGTGCATTGTTATTTAAGGTTTTAGCTGATAGTTTGGGCATCCCATGTCGGTTGGTGAAGGGGCTGCAATATACAGGTTCCAATGACGTGGCCATTAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTTGACCTAATGGCAAATCCTGGAACTCTTATTCCATCTTATGCAACTGGATCACATATAGAGTATGACGAATCTTCATACGTGGCCAGTCCTTCATCAAGAGACCTTGATTCCTCTCATGTAGCATCATCCAGCAGTGGTGTTGGAAGTTCATATGAAGAAACTTCAGATTTGGGGACATTGGACAAAGGAAACAGATCAAAACAATTTTACGATACAGGAAAAGAATCTGATGTAAGCAGACAGTCTACTGGAAAGGAAGAATCAATGAGACCCTTGAATGAGTTCAAAAGTCCTCACAATGTTCAGAAGATTGCAGGGCAGGAAGCTCCTGGAAGACCTAATCATCCACATGTACATGCAAGATCTCCTTCTTGGACTAAAGGGATCAGTTCTCCTGCAGTACGCAGGATGAAAGTTAAAGACGTTTCTCTATACATGATTGATGCTGCCAAGGAGAACCCTCACTTAGCCCAGAAACTTCATGATGTTTTACTTGAAAGTGGTGTGGTTGCTCCTCCAAATCTATTTTCTGAAATTTATGACGAAGATTTAGGTTCCTCAAGCGAAGAAAAAGATGAACAAAAACAAGGAAATGAACAGCAAGAGGCCGAGGTTGATGGTAATCCTAGTCCTCAAATTTTGCCTCCTTTGTCTCACCAGAGTGTTCATCCCAAAGCAAGTACTAGCAGTCAGCTGGAGCATTCTAAACCTGTTGAAGGTTTAGGAATCAACCTTCCTCTTCATACAAGGGAACCAGCCGGACAGCATTTACCAACTCAGGTAAAATATGGGCAAAATGTCCCAGTTGCTGCTGCCGCTGCCgctgctgctgttgttgctgttgttgatatgagttGTCATAAGCTTTTGTCAAGTAATGTGACTTATCTTAATTTAAATAATTGGTTACACAACATCATAGAAAGGTGTGATGTTTATAGCTTTGGAGTCATATTATGGGAGCTCTCTACTTTGCGGCAACCATGGGGAGGAATGAATCCGATGCAAGTTGTTGGTGCGGTGGGCTTCCAGCATCGCCGTCTGGACATTCCAGATAACATGGACCCTGCCATTGCTGATATTATCAGGAAATGCTGGCAAACAGATCCAAAGTTGAGACCTACATTTGCTGAAATATTGGCGGCTCTAAAGCCGTTACAGAAGTCGGTTATCGGAGCTCAGGTGCCTCGGCCAAGCGCTTCAGGGAAGCATGAGAAGGCTCAGTCATCACGTGCTGTAGAAGACTCAGCAATATAG 1731 0.4252 MPSLVDLQLQGTSISGSGRWEAVLVNRVADSNLLKLVQKAQDLTGKSSPDFEVVIDSNVVHKLAIFVADYMGGPVGDPESMTRAWRSLSYSLKATVGSMILPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYTGSNDVAINFVKIDDGREYIVDLMANPGTLIPSYATGSHIEYDESSYVASPSSRDLDSSHVASSSSGVGSSYEETSDLGTLDKGNRSKQFYDTGKESDVSRQSTGKEESMRPLNEFKSPHNVQKIAGQEAPGRPNHPHVHARSPSWTKGISSPAVRRMKVKDVSLYMIDAAKENPHLAQKLHDVLLESGVVAPPNLFSEIYDEDLGSSSEEKDEQKQGNEQQEAEVDGNPSPQILPPLSHQSVHPKASTSSQLEHSKPVEGLGINLPLHTREPAGQHLPTQVKYGQNVPVAAAAAAAAVVAVVDMSCHKLLSSNVTYLNLNNWLHNIIERCDVYSFGVILWELSTLRQPWGGMNPMQVVGAVGFQHRRLDIPDNMDPAIADIIRKCWQTDPKLRPTFAEILAALKPLQKSVIGAQVPRPSASGKHEKAQSSRAVEDSAI 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00295 576 MobiDBLite consensus disorder prediction 225 251 - -
Cca08g00295 576 MobiDBLite consensus disorder prediction 552 576 - -
Cca08g00295 576 SMART tyrkin_6 336 541 IPR020635 GO:0004713|GO:0006468
Cca08g00295 576 Gene3D Transferase(Phosphotransferase) domain 1 453 574 - -
Cca08g00295 576 MobiDBLite consensus disorder prediction 186 288 - -
Cca08g00295 576 MobiDBLite consensus disorder prediction 186 224 - -
Cca08g00295 576 MobiDBLite consensus disorder prediction 359 393 - -
Cca08g00295 576 SUPERFAMILY Protein kinase-like (PK-like) 466 542 IPR011009 -
Cca08g00295 576 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 363 - -
Cca08g00295 576 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 466 574 - -
Cca08g00295 576 Pfam Ethylene-responsive protein kinase Le-CTR1 1 168 - -
Cca08g00295 576 MobiDBLite consensus disorder prediction 338 393 - -
Cca08g00295 576 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 466 574 - -
Cca08g00295 576 Pfam Protein tyrosine and serine/threonine kinase 465 540 IPR001245 GO:0004672|GO:0006468
Cca08g00295 576 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00295 Cca-Chr8 4260449 4267420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00295 466 556 MAP Kinase Kinase Kinase AT1G73660 79.121 3.35e-44 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Cca08g00295 EDR1 1.9e-55 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00295 - - gmx:100816332 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02819 09 53773379 53781889 Cca08g00295 08 4260449 4267420 PCT