Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00290 ATGTGGATGGTGGGTTACAATGAAGGTGGAGAGTTCAACAATATGGTTGATCATTCACTCAGTGGAAGGAAACTCAGGCCTCTCATGCCAAGGCCAATGACTTCTCTTaacaacgcaacaacaacaacaaccacTCCTGGCTTAACTCACATCCATGGCAATGATTTCCTTTCACAATATCATTATCACCATCTTGAACAAAACAAGAGAGAGCAATTGCCAGTTGTGGTGAGTTCAAGGTGGAATCCTACCCCAGAGCAACTAAGAGTCCTTGAAGAGTTGTATAGAAGAGGAACAAGGACACCATCTGCTGAGCAAATCCAACACATTACTGCACAACTTAGAAGGTTTGGTAGCATTGAAGGGAAGAATGTGTTCTATTGGTTTCAGAATCACAAAGCCAGAGAAAGGCAAAAGCGCCGCCGCCAAATGGAATCAGATGCTGAAACTCCAGAGAAGAAAGATTTAGCTGCAAGTAGGACAGTGTTTGAAGCTGAATGGACCAAGAACTGGACACCCTCAACAAACTGCAGTACCATTGCAGAGGAATCTGTTTCAACACAAAGGACAGCAAAAGCAGTGTATGCAGAGAGTAGAACAGATGGATGGCTCCTATTCCATGAAGGGGAATTACAACAAAGAAGAAACCTTTTGGAAAGGAATGCAACGTGGCATGTGATGCAGTTACCATGTCCTTCTCCTGCACCTGTCACCCACCTCATAAACACCCCTCCTAATGCATCTGCAGCCACTACTACAACCACAGTAATAGCAACAACAAAAATGGACCCAAACCTCATTAAGGCACATGATCTCAGCTTTTTTTTTACACCCCAGAGAGAAAACAGTGTTATTCACTTGAGTAGTAGCAGTAGTACTAGTGAAGATGATAACTGTGTGGAGTCTCAAACCCTTCAACTTTTCCCTTTAAGGAGTGGTGATGATGGAAGCAGTGACAACATTAAGGATAAGGACACAGAGATATCAACTTCAGCAATGAATGCCAATAACTTAACCCCAGGCCAGTTTTTTGAGTTCCTTCCTATGAAGGACTGA 1056 0.4214 MWMVGYNEGGEFNNMVDHSLSGRKLRPLMPRPMTSLNNATTTTTTPGLTHIHGNDFLSQYHYHHLEQNKREQLPVVVSSRWNPTPEQLRVLEELYRRGTRTPSAEQIQHITAQLRRFGSIEGKNVFYWFQNHKARERQKRRRQMESDAETPEKKDLAASRTVFEAEWTKNWTPSTNCSTIAEESVSTQRTAKAVYAESRTDGWLLFHEGELQQRRNLLERNATWHVMQLPCPSPAPVTHLINTPPNASAATTTTTVIATTKMDPNLIKAHDLSFFFTPQRENSVIHLSSSSSTSEDDNCVESQTLQLFPLRSGDDGSSDNIKDKDTEISTSAMNANNLTPGQFFEFLPMKD 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00290 351 PANTHER WUSCHEL, PUTATIVE-RELATED 34 243 - -
Cca08g00290 351 PANTHER WUSCHEL, PUTATIVE-RELATED 265 350 - -
Cca08g00290 351 SMART HOX_1 76 143 IPR001356 GO:0003677
Cca08g00290 351 MobiDBLite consensus disorder prediction 137 156 - -
Cca08g00290 351 MobiDBLite consensus disorder prediction 140 156 - -
Cca08g00290 351 Pfam Homeodomain 79 138 IPR001356 GO:0003677
Cca08g00290 351 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 34 243 IPR044555 GO:0003700|GO:0099402
Cca08g00290 351 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 265 350 IPR044555 GO:0003700|GO:0099402
Cca08g00290 351 ProSiteProfiles 'Homeobox' domain profile. 84 139 IPR001356 GO:0003677
Cca08g00290 351 Gene3D - 76 139 - -
Cca08g00290 351 CDD homeodomain 80 140 IPR001356 GO:0003677
Cca08g00290 351 SUPERFAMILY Homeodomain-like 79 144 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00290 Cca-Chr8 4229724 4232065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00290 1 351 Wox Gene Family AT3G18010 38.875 1.15e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca08g00290 Homeodomain 1.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00290 - - gmx:100819541 569.696