Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00289 ATGAGACGTTTTAATACCTACGGCGAAGGTCACCTTGAAGGTGGAACAGAAACAAAGCCTGAGCGAGATCAGACCTCCAGCCTAGGATGTGAGGGTGGCATCGCTAACGGCTCAATCCATTGTGAATCAGATGGTGGTGGATTATGTCCTGTTTCTCAAGATCCTAACGAGGTTGCCACTAAGGAGTTGGCTGAGAACGCTGAAATACAGCTTAGTGATTTTGTTGAGAGTTTTGAACCTGATACCTATGAGTCAACCGGATCCCCACAGAAAAAATCTAACTTTCATCCTGTAGTTCAGTATTTTATTGATGCCATCAAGCAAAATAGGGATTTGCAGAGATTTCTTAGAAGTAAGTTGATTGCACTTGAGGCTAAAATTGAGGAAAACAAACAGATAAGGAACAAAATTAAAATTCTTAAGGATTTCCAGGCTTCGTGCACTAGAAGAACTGGGAGTGCGTTATCACTGAAAAAGGATCCACTTGTTCAGTTAATATCAGCAAAAAAGTCTACTGCTCCAAAGAACTCTAAGAAGAAGCATAAAAAAATACCAGCAATGTGTTATGGCCCAGAAGAGAATTCTCGTGTTGCTAATTATAGGATGGTGTTGGAAAGATTTCCGCTTTCATGGGATCGGAAAAAATGGTCTAAGGTAGAAAGGGAAAATCTTTCAAAAGGAATTAAGCAACAATTCCAAGAAATGGTGTTTCAAGTTTCAGTAGATAGATTAAGTTCAGAGGTTGGAGATGCAAATGACATGGATAATATAATTGCATCTGTTAAAGATCTTGAGATCACACCAGAGAGGATTAGAGAATTTATACCTAAAGTTAATTGGGATCAGTTAGCTTCCATGTATGTTGCTGGTCGTACTGGTGCTGAATGTGAATCAAGGTGGTTGAATTGTGATGATCCTTTGATCAACCAAGGTGCATGGACTAATGAAGAGGACAAGTCTCTTTTACTTGTTGTCCAAGATATGGGCATTAGGAACTGGTTTGATATTGCCGCATCATTGGGCACAAGCAGGACACCATTTCAATGCTTGTCACGATTCCAGAGGAGCTTAAATCCTTCCATGTTAAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTCTGTTCTGCTGTGGCATGTTTTGGTGAGAAGGATTGGCAGTCTGTGGCTTCTGTTTTAGAACGGAGGACAGGAACCCAATGCTCGAATAGATGGAAAAAATCCCTTTGTCCCGACAAGAAAGGGAGCTTTACATGTGAAGAGGATATACGCTTAACAGTAGCAGTCATGCTTTTTGGACGGAAGTGGAATCTAATAGCAAAATATGTTCCTGGCCGGATCCAATCTCAGTGTAGGGACAGATACCTCAATAGTCTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTTAAGATTAGAAACTGCAATTGCCAAGCATGGATACTGCTGGTCTAAGATTGCTGAAGAAGTGCCTCCCCGTACTGATTCTCAATGCCGGAAGAGATGGAAGGTGATATGTCCTGAACAAGTTCCTTTGCTTCAAGAAGCCAGAAAGAAGCAAAGGTCTGTTATTGGTAGTAACTTTGTTGATAGAGAATCTGATCGCCCAACCATTACATTGAATGACTTTCTACCTTTAAATGCTTTAGCCCCAAAATCTGATGATGTTGGTGCTTCAAATCGCCGGAAGAAGGGCAAGTCAAGCAATGTTCCCAAGAAAACGAGTTCGAAAAAACGTGCCAAAAGAACTCGACTTCGTGCCAAGGAAGTACAAAATACAGATGTATATAGCGATGATGAGATCAAGACTTGTGATGAAGAAGGCCCAGACTCTGCATGCAGCAATGTTCGCAAGAAGATGAGGCCCAAAAGACATGCAAAAAACACTCGACGTTGTCCCAAGGAAGTAGTGGATACATCATGTAGTGACAAGGTCAATTCTACCTGTATTGCAAGTTCTGAAAATCAAGATTCGGACAAATCAAAGAGATTATCTAGAGTTGGAAATGAAGATTTGTTTGAGAAGCAGAATGATGCTTCTGACAGACAAGTGGGAAAACCAGATGATGCAAACACTTTGACCAGTGATGATGATGATGGTATGACCCATGCATGCTTTGTGGGAAACAAACCAAAGAAAGGGAGTCAAGCTGCTAAAAAACGTTGTGCACGCTCTTCTTCCAAATTGAAAAAGGGTTATGCGTTACTTCGTGAAGGGCGTTGTGCAAGCAAGCCAACCAACAAATCTGATGACAGTGGGCCATCAGTGTCAAGGCATGTTGAAGAGGAGACTGTTCTGCATGGCGGTGTTGCTGAACGCATGGACATCAATGTGGAAGAAGATGATGCCCTGCTTTCTTCCTTCTTGCAAAGCAGGCCCAAGAGACAGACAAAACGCCCCAGTAGGTATTTATAA 2427 0.4186 MRRFNTYGEGHLEGGTETKPERDQTSSLGCEGGIANGSIHCESDGGGLCPVSQDPNEVATKELAENAEIQLSDFVESFEPDTYESTGSPQKKSNFHPVVQYFIDAIKQNRDLQRFLRSKLIALEAKIEENKQIRNKIKILKDFQASCTRRTGSALSLKKDPLVQLISAKKSTAPKNSKKKHKKIPAMCYGPEENSRVANYRMVLERFPLSWDRKKWSKVERENLSKGIKQQFQEMVFQVSVDRLSSEVGDANDMDNIIASVKDLEITPERIREFIPKVNWDQLASMYVAGRTGAECESRWLNCDDPLINQGAWTNEEDKSLLLVVQDMGIRNWFDIAASLGTSRTPFQCLSRFQRSLNPSMLNSEWTEEEDAQLCSAVACFGEKDWQSVASVLERRTGTQCSNRWKKSLCPDKKGSFTCEEDIRLTVAVMLFGRKWNLIAKYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLRLETAIAKHGYCWSKIAEEVPPRTDSQCRKRWKVICPEQVPLLQEARKKQRSVIGSNFVDRESDRPTITLNDFLPLNALAPKSDDVGASNRRKKGKSSNVPKKTSSKKRAKRTRLRAKEVQNTDVYSDDEIKTCDEEGPDSACSNVRKKMRPKRHAKNTRRCPKEVVDTSCSDKVNSTCIASSENQDSDKSKRLSRVGNEDLFEKQNDASDRQVGKPDDANTLTSDDDDGMTHACFVGNKPKKGSQAAKKRCARSSSKLKKGYALLREGRCASKPTNKSDDSGPSVSRHVEEETVLHGGVAERMDINVEEDDALLSSFLQSRPKRQTKRPSRYL 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00289 808 Gene3D - 307 357 - -
Cca08g00289 808 ProSiteProfiles Myb-like domain profile. 460 510 IPR001005 -
Cca08g00289 808 MobiDBLite consensus disorder prediction 660 689 - -
Cca08g00289 808 SUPERFAMILY Homeodomain-like 438 510 IPR009057 -
Cca08g00289 808 Pfam Myb-like DNA-binding domain 313 374 - -
Cca08g00289 808 MobiDBLite consensus disorder prediction 1 33 - -
Cca08g00289 808 MobiDBLite consensus disorder prediction 553 641 - -
Cca08g00289 808 MobiDBLite consensus disorder prediction 758 778 - -
Cca08g00289 808 SUPERFAMILY Homeodomain-like 361 455 IPR009057 -
Cca08g00289 808 ProSiteProfiles Myb-like domain profile. 413 459 IPR001005 -
Cca08g00289 808 CDD SANT 365 409 IPR001005 -
Cca08g00289 808 Gene3D - 467 513 - -
Cca08g00289 808 ProSiteProfiles Myb-like domain profile. 305 357 IPR001005 -
Cca08g00289 808 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 77 719 - -
Cca08g00289 808 CDD SANT 416 459 IPR001005 -
Cca08g00289 808 Pfam Myb-like DNA-binding domain 467 507 IPR001005 -
Cca08g00289 808 Pfam Myb-like DNA-binding domain 414 457 IPR001005 -
Cca08g00289 808 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 358 413 IPR017930 -
Cca08g00289 808 Gene3D - 364 412 - -
Cca08g00289 808 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 305 357 IPR017930 -
Cca08g00289 808 Gene3D - 413 465 - -
Cca08g00289 808 Gene3D - 212 306 - -
Cca08g00289 808 CDD SANT 468 507 IPR001005 -
Cca08g00289 808 SMART sant 362 411 IPR001005 -
Cca08g00289 808 SMART sant 464 512 IPR001005 -
Cca08g00289 808 SMART sant 413 461 IPR001005 -
Cca08g00289 808 SMART sant 212 306 IPR001005 -
Cca08g00289 808 SMART sant 309 359 IPR001005 -
Cca08g00289 808 MobiDBLite consensus disorder prediction 655 705 - -
Cca08g00289 808 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 414 459 IPR017930 -
Cca08g00289 808 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 460 514 IPR017930 -
Cca08g00289 808 CDD SANT 312 357 IPR001005 -
Cca08g00289 808 ProSiteProfiles SANT domain profile. 468 511 IPR017884 -
Cca08g00289 808 SUPERFAMILY Homeodomain-like 286 354 IPR009057 -
Cca08g00289 808 MobiDBLite consensus disorder prediction 569 589 - -
Cca08g00289 808 MobiDBLite consensus disorder prediction 742 778 - -
Cca08g00289 808 ProSiteProfiles Myb-like domain profile. 358 409 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00289 Cca-Chr8 4179204 4186129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00289 89 561 MYB-Related Transcription Factor Family AT3G18100 52.165 7.91e-171 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca08g00289 Myb_DNA-bind_6 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00289 K09422 - gmx:778073 1156.35