Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00288 ATGGGCATCAAGGATCTTCTGAGGTTCATGAAACCTTACATTGAACCCGTTCACATTAAGAAGTACGCTGGAAAACGCGTGGGTATTGACGCGTATTCGTGGCTTCATAAAGGGGCTTATTCATGTAGTATGGAGCTTTGTCTTGATTCCGATAGTGAAAGGAAGTTGCGGTACATTGAATACTTTATGCATCGAGTGAACTTGCTTCGCTTCTATAGAATAACCCCGGTTGTTGTTTTTGATGGTGGCAATGTTCCTTGCAAGGCAGCAACTGAGGAAGAGAGGAACAGAAAAAGAAGGGCTAATCGTGAGTTGGCAATGGCGAAGCTTAAAGAAGGGAATGTTGGTGCGGCTTCAGAGCTTTTCCAGAGAGCAGTGAATATTACTCCCCTTATGGCACATAAGCTAATTCAGACCCTGAAATCAGAGAATATTGAGTTTGTCGTAGCTCCATATGAAGCAGATGCTCAGTTAGCGTACATGGCTCATCTTGGAGTAGAAAATGGCGGAGTTGCAGCAGTGATCACAGAAGATAGTGATCTGATAGCATATGGCTGTCCAGCTATTATTTTTAAGATGGACCGTCATGGGAACGGTGAAAGAATAGAGTTAGAGAAGGTTTTTTCTGCTGAGTCTGGTAGACCTTCATTTCGGAGTTTCAATATGGAACTCTTGACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGTTCGAGCTCATGCTTTAGTTTCTAAGTATCGGAACCTAGACCGTGTCTTGTCTGTTCTTAAGCTTGAGAAAGGCAATCAAATGCCAGAAGATTATGCCAAATCCTTTCAAGAGGCAGTTGCGGTGTTTCAGCATGCTCGAATATATGATACCAACGCCAGAGAGCTCAAGCACATGAAGCCTCTTCCCCAAAATTTTCCCGAGTCACTTGATGGAAAACTTGATTTCTTGGGACCAGAAATTCCTTCATCTATAGTCACAGCAATAGCTGAAGGAAACTTGAATCCATCAACTAAGGAAGCCTTTGATAAGTCCGAATGTTCTAGATTTCCTCTACGCTCCATTGATCTCCAAAGTATTGGTCAAGTCCAGAAAGCTGAAATTCCTGCACCATCTAGACAGGAGAGTAGCTTTTCAATCATTGCCTCTCATTACACCAGAGAAATCAGTACAGTGACAAAGCTCTCGGATAAAGATAAGTATGCTGATGAAGCATTGTCACTTCAGAAACTACTCATACCAATGCCATTGGGAAAAAATGGAACAGAAGAAAAGACCATAATATCTTATGACACTCCTTCGGAGGTTTATGACAACAATCCATTCATGATAAGAAAAAAGGAGGAAACATATCAGACCAAGGACACTTTTGGAAAAGTTTCTGTTGCCAGCAGCATGGAAAATGCTGACTTATGCATGTCTCCAGTTATCTTTCAAGGAGAGGGGTCTGAGAATCTCTCAAGGAAAAGGAAATTTCAGAACATTGGCTCAGATAAAGTTGAAGTCACCGATGAACTGGTTTCAGGAGTGACTGAAATAGAAAAGTCTGATATTCTATGTATGACTATGGAATCCCCAGAAAGTATAAATTCTGAGACTAAGAAAATTGCTGAGTTGAAGGGAAAAAGTGAAAGTAAAATGAAATCCAAGAGAAGCAACAGCAAGAAAACGGAGCGTAACAACAGAACTCTTTTGAATTTCTTTTCTAGAGTGTAA 1731 0.4107 MGIKDLLRFMKPYIEPVHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSERKLRYIEYFMHRVNLLRFYRITPVVVFDGGNVPCKAATEEERNRKRRANRELAMAKLKEGNVGAASELFQRAVNITPLMAHKLIQTLKSENIEFVVAPYEADAQLAYMAHLGVENGGVAAVITEDSDLIAYGCPAIIFKMDRHGNGERIELEKVFSAESGRPSFRSFNMELLTGMCVLAGCDFLPSVPGIGIVRAHALVSKYRNLDRVLSVLKLEKGNQMPEDYAKSFQEAVAVFQHARIYDTNARELKHMKPLPQNFPESLDGKLDFLGPEIPSSIVTAIAEGNLNPSTKEAFDKSECSRFPLRSIDLQSIGQVQKAEIPAPSRQESSFSIIASHYTREISTVTKLSDKDKYADEALSLQKLLIPMPLGKNGTEEKTIISYDTPSEVYDNNPFMIRKKEETYQTKDTFGKVSVASSMENADLCMSPVIFQGEGSENLSRKRKFQNIGSDKVEVTDELVSGVTEIEKSDILCMTMESPESINSETKKIAELKGKSESKMKSKRSNSKKTERNNRTLLNFFSRV 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00288 576 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Cca08g00288 576 MobiDBLite consensus disorder prediction 536 563 - -
Cca08g00288 576 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Cca08g00288 576 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 571 - -
Cca08g00288 576 SMART xpgineu 141 213 IPR006086 GO:0004518
Cca08g00288 576 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Cca08g00288 576 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 571 IPR006084 -
Cca08g00288 576 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Cca08g00288 576 Gene3D - 1 212 - -
Cca08g00288 576 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Cca08g00288 576 MobiDBLite consensus disorder prediction 535 567 - -
Cca08g00288 576 SMART xpgn3 1 102 IPR006085 GO:0004518
Cca08g00288 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Cca08g00288 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Cca08g00288 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Cca08g00288 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Cca08g00288 576 Coils Coil 91 111 - -
Cca08g00288 576 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Cca08g00288 576 CDD H3TH_FEN1-like 223 295 - -
Cca08g00288 576 Gene3D - 218 291 - -
Cca08g00288 576 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00288 Cca-Chr8 4166783 4171171 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00288 1 306 Core DNA Replication Machinery Family AT5G26680 23.125 1.03e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00288 K10746 - gmx:100817932 940.258