Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00284 ATGGCAGAACTTGATCTATCCAAGAAAGTAGCTGATAGGTATCTCAAGCGTGAGATCCTTGGTGAAGGTACATACGGTGTCGTTTACAAAGCCATTGATACCCAGACAGGGCAGACGGTTGCAATTAAGAAAATCCGGCTTGGCAAGCAGAAAGAAGGGGTCAATTTTACTGCTCTCAGAGAAATTAAACTTCTTAAAGAGCTCAAAGATCCAAACATTATAGAGTTGATCGATGCCTTTCCGCATAAAGGAAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTCGAAGCTGTTATACGAGATCGGAACATTGTTCTTTCACCCGGTGATATAAAATCTTACCTTCAGATGACGCTAAAAGGCCTTGCTGTTTGCCATAAGAAATGGGTGTTGCATAGGGATATGAAGCCAAACAACTTGTTGATAGGATCTAACGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGGTATTTGGAAGCCCAGATCGCAGGTTCACTCATCAGGTGTTTGCCCGGTGGTATAGAGCACCTGAGCTATTATTTGGTACCAAGCAGTATGGTCCAGGAGTAGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCCTTCTTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTCTCAGCATTTGGGACTCCATCTCCTTCTCAGTGGCCTGATATGATATACCTTCCTGATTATGTGGAATACCAATATGTTCCTTCCCCATCTTTGCGCTCTTTATTTCCGATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACTTATGACCCAAAAGTTAGAATTTCAATTCAGCAGGCATTAGAGCACAGGTACTTCACTTCTGCACCTCTGCCCACAGATCCTGATAGACTTCCAAGACCTGCCCCTAAGAAAGAATCTAAGGCTTCAGATATGATTTCAAATGAAGGTCCTATCGTCTTATCCCCTCCAAGAAAGTCTAGGAGAGTAATGCCAGGGCGTGATGTGTCTGAAGGCAATTCTTTGCAAGGAGATAAGTTAGATGACAGTGTTAGTGTCAGACAGGCAGTCGGTGATAATACAGGAAAGAATGAGCCGGCTCCAATGTCACTAGATTTTTCTCTTTTTGGATTAAAACCTCCAAATAGACCTACAATTACGAGTGCTGACAGATCACATTTAAAAAGAAAATTAGATCTAGAATTCTAG 1233 0.4185 MAELDLSKKVADRYLKREILGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIVLSPGDIKSYLQMTLKGLAVCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARVFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFSAFGTPSPSQWPDMIYLPDYVEYQYVPSPSLRSLFPMASDDALDLLSKMFTYDPKVRISIQQALEHRYFTSAPLPTDPDRLPRPAPKKESKASDMISNEGPIVLSPPRKSRRVMPGRDVSEGNSLQGDKLDDSVSVRQAVGDNTGKNEPAPMSLDFSLFGLKPPNRPTITSADRSHLKRKLDLEF 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00284 410 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Cca08g00284 410 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Cca08g00284 410 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00284 410 MobiDBLite consensus disorder prediction 296 400 - -
Cca08g00284 410 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Cca08g00284 410 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00284 410 SUPERFAMILY Protein kinase-like (PK-like) 9 302 IPR011009 -
Cca08g00284 410 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
Cca08g00284 410 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Cca08g00284 410 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Cca08g00284 410 MobiDBLite consensus disorder prediction 351 367 - -
Cca08g00284 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Cca08g00284 410 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00284 Cca-Chr8 4099908 4104930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00284 8 410 Core Cell Cycle Gene Families AT1G73690 77.228 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Cca08g00284 Pkinase 1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00284 K02202 - gmx:100814263 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00284 08 4099908 4104930 Cca08g00284 08 4099908 4104930 ECH
Cca09g02801 09 53615744 53620729 Cca08g00284 08 4099908 4104930 PCT