Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00283 ATGGAGAGAGAACACCAAAACCAAAGTTCACCTCTTCAGTCACCATTGATTCAGCACTCAAACTCAGGGCAAGATGGACTCGTAGTTAAAGAAAAGCAAAGAAGTTGGAGGGGAATTGTGCGAAGTGAAGTTGTTGAAGAAGTGAAAAAACAGCTATGGCTTGCAGGGCCTTTGATTTCAGTGACCCTTTTAAATTATTCTCTAACTGTTATATCTGTCATGTTTGTGGGGCATCTAGGCGAGTTGGCTCTTTCTGGTGCTTCCATGGCCACTTCTTTTGCCAGTGTCACAGGTTTCAGTTTATTGttaggaatggcaagtgccttggacaccttttgtgggcaggcatatggagcaaagcagtataagatgttaggcatacacatgcagagagccatgttgattctcatgattgtcagcattccacttgcagttatttgggcaaacacagggtccattcttgttttccttggccaggatcatgaaatagctgcagaagctgggagctttgctaggtttatgcttccaagcctttttgcctatggccttctacaatgcctcaacagatttttacaaacccaaaatattgtatttccaatgatgtgcagctccggaattaccacattactgcatgtgcttttgtgttggtttatggtattcaagtctggacttggacataaaggagctgcactagcaaattctatatctttgtggttgaatgttactttactctcactctatgtcaagttttctccttcatgtgcaaaatcttggacaggcttttccaaagaggcactgcatgacattcccacattcgtgaggcttgccattccttcggctgttatggtttgcttggaaatgtggtcatttgaaatgatggttctcctttctggtcttcttccaaatccaaagttggaaacatcagtgctttccatctgCTTGAATACTGCAGCAGTTGTTTGGATGATCCCTTTTGGACTCAGTGGAGCAGGAAGCATTCGTGTCTCCAATGAACTTGGAGCTGGTCGTCCTTGGACTGCACGTTTAGCAGTGTGTGTTGTCTTAGTAATGGCCATTATTGAGGGCATCTTAGTTGGAACATTGATGATACTTGTGCGCAATATCTGGGGCTATGCATATAGCAATGAAGTAGAAGTAGTCAAATATGTAGCAACTATGTTCCCAATTCTTGCAGCATCCAACTTTCTGGATGGACTCCAATGTGTTCTTTCAGgcactgctagaggatgtggttggcagaaaatcggtgcatttgtcaatttggggtcatactatttagttgggattccatcagctattgtgtttgcttttgtattgcatattggtgggaaggggctctggttggggatcatatgtgcactcattgttcaagtgtgctctttaacgatcattactattcgcactgattgggagcaagagGCAAAGAAAGCTACAGATAGAGTCTATAATTCAGTAACATCAGAGAGCTTGGTCTCATGA 1500 0.1887 MEREHQNQSSPLQSPLIQHSNSGQDGLVVKEKQRSWRGIVRSEVVEEVKKQLWLAGPLISVTLLNYSLTVISVMFVGHLGELALSGASMATSFASVTGFSLLLGMASALDTFCGQAYGAKQYKMLGIHMQRAMLILMIVSIPLAVIWANTGSILVFLGQDHEIAAEAGSFARFMLPSLFAYGLLQCLNRFLQTQNIVFPMMCSSGITTLLHVLLCWFMVFKSGLGHKGAALANSISLWLNVTLLSLYVKFSPSCAKSWTGFSKEALHDIPTFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPKLETSVLSICLNTAAVVWMIPFGLSGAGSIRVSNELGAGRPWTARLAVCVVLVMAIIEGILVGTLMILVRNIWGYAYSNEVEVVKYVATMFPILAASNFLDGLQCVLSGTARGCGWQKIGAFVNLGSYYLVGIPSAIVFAFVLHIGGKGLWLGIICALIVQVCSLTIITIRTDWEQEAKKATDRVYNSVTSESLVS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00283 499 Pfam MatE 278 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca08g00283 499 Pfam MatE 57 216 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca08g00283 499 CDD MATE_eukaryotic 47 483 IPR045069 GO:0042910|GO:1990961
Cca08g00283 499 PANTHER MULTIDRUG RESISTANCE PROTEIN 32 487 - -
Cca08g00283 499 MobiDBLite consensus disorder prediction 7 22 - -
Cca08g00283 499 MobiDBLite consensus disorder prediction 1 22 - -
Cca08g00283 499 TIGRFAM matE: MATE efflux family protein 57 454 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca08g00283 499 PANTHER PROTEIN DETOXIFICATION 32 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00283 Cca-Chr8 4071301 4076285 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00283 K03327 - gmx:100815319 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00283 08 4071301 4076285 Cca09g02800 09 53610664 53614119 ECH
Cca07g02475 07 53524002 53527950 Cca08g00283 08 4071301 4076285 ECH
Cca09g00497 09 12422446 12435332 Cca08g00283 08 4071301 4076285 ECH
Cca02g02592 02 47038579 47041997 Cca08g00283 08 4071301 4076285 ECH
Cca08g00283 08 4071301 4076285 Cca08g00283 08 4071301 4076285 ECH