Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00280 ATGAACTCAGCTAGAGACACTGAGGGCCATGGAACTCACACATCATCAACAGTTGCTGGCAACTATGTTAGTGGAGCCTCTTTCTTTGGCTATGCTAAAGGGGTGGATAGAGGCATTGCACCAAGAGCTAGGCTTGCCATGTACAAGGTCCTTTGGGAAGAGGGTGCTGTAACCTCTGATGTTTTGGCTGGAATGGACCAAGCCATTGCTCATGGGGTTGATGTGATTTCCATCTCTATGGGGTTTGATTATGTTCCACTTTATGAGGACCCTATTGCAATAGCTTCTTTTGCAGCATTGGCAAAAGGGGTGTTGGTTTCATCTTCTGCAGACCGCACATTTGGTGCTCTTGTTCTTGGAAATGGCCAACCCATCGCTGGTTGGACCTTGTTTCCGGCAAATGCCATAGTGGAAAATCTTCCACTTATCTACAACAAGAATATATCAGCATGTAACTCAGTTAAGGTGTTATCCAAAGTGGCCACACAAGGGATCATCCTCTGTGACACTAAGTTTGACACAGTGTTCATATCTACGCAAATGTGGTTTGCTAATAAAGCCAGTTTGTCAGGGGCAGTGTTTATCTATGATTCCCCTTCATTAGATGACACAGGTATTGGCAGATCTCCAAGCATCGAAATCAGTGCACAGGATGCACAATCTGTGATCAAGTATGCAAAATGCCATAAGAAGCCAACAGCCAGCATCAAATTTCAACAAACATTTGTTGGAATAAAGCCAGCACCAGCTGCTGCCTCTTACTCTTCAAGAGGTCCTTCACCTAGCTATCCTGGGGTCTTAAAGCCAGACATAATGGCAGCAGGCTCAAATGTTCTTGCTGCTTTCAATCCTCATTTGGAAACAGCCACCATTAGCACCAATGTGATCTTACCTAGTGACTACAATTTGTTGTCTGGAACATCCATGGCCTGCGCTCATGCTTCCGGTGTTGTTGCTCTTTTGAAAGCTGTACACCCTCAATGGAGTGCTACTGCTATAAGGTCAGCACTAGTAACCACAGCTAGTCCTCTAAATAATACTCAAAATCCAAATAGAGACTATGGTTACCCTTCTCAATATGCTTCCCCTCTTGCCATTGGAGCTGGTCAAATTGATCCTAACAAAGCACTTGATCCAGGTTTGGTATATGATGCCACCCCACAGGACTATGTTAATCTCCTTTGTGCTTTGAACTACACAATAAAACAAATCTTAACCATTACAAGATCAACCTCCTACAACTGTTTCAAACCATCCTTTGATTTTAACTACCCTTCATTCATAGCTTTCTACAACAACAGAACAAGGTCAGTTTTCCACAAGTTTAGGAGGACCGTGACCTATGTTAGAGATGGTCCTGCCGCATACAGGGCCAAGGTGACACTACCTAAGGACTTTGTGATGACAGTATCACCTGAGACATTAGCTTTCAGATATAAAAATGAGAAGCAGAGCTACGATGTTATCATAAAGTATAGCAAGTACGAGAAGGAAAATATCTTATTTGGGGATCTCGTTTGA 1521 0.4326 MNSARDTEGHGTHTSSTVAGNYVSGASFFGYAKGVDRGIAPRARLAMYKVLWEEGAVTSDVLAGMDQAIAHGVDVISISMGFDYVPLYEDPIAIASFAALAKGVLVSSSADRTFGALVLGNGQPIAGWTLFPANAIVENLPLIYNKNISACNSVKVLSKVATQGIILCDTKFDTVFISTQMWFANKASLSGAVFIYDSPSLDDTGIGRSPSIEISAQDAQSVIKYAKCHKKPTASIKFQQTFVGIKPAPAAASYSSRGPSPSYPGVLKPDIMAAGSNVLAAFNPHLETATISTNVILPSDYNLLSGTSMACAHASGVVALLKAVHPQWSATAIRSALVTTASPLNNTQNPNRDYGYPSQYASPLAIGAGQIDPNKALDPGLVYDATPQDYVNLLCALNYTIKQILTITRSTSYNCFKPSFDFNYPSFIAFYNNRTRSVFHKFRRTVTYVRDGPAAYRAKVTLPKDFVMTVSPETLAFRYKNEKQSYDVIIKYSKYEKENILFGDLV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00280 506 Gene3D - 394 506 - -
Cca08g00280 506 Gene3D - 111 243 - -
Cca08g00280 506 Pfam Subtilase family 2 356 IPR000209 GO:0006508|GO:0008236
Cca08g00280 506 ProSiteProfiles Serine proteases, subtilase domain profile. 1 377 - -
Cca08g00280 506 PANTHER OS01G0868800 PROTEIN 3 504 - -
Cca08g00280 506 SUPERFAMILY Subtilisin-like 3 378 IPR036852 GO:0004252|GO:0006508
Cca08g00280 506 PRINTS Subtilisin serine protease family (S8) signature 305 321 IPR015500 -
Cca08g00280 506 PRINTS Subtilisin serine protease family (S8) signature 6 19 IPR015500 -
Cca08g00280 506 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 3 504 IPR045051 -
Cca08g00280 506 Gene3D Peptidase S8/S53 domain 244 390 IPR036852 GO:0004252|GO:0006508
Cca08g00280 506 Gene3D Peptidase S8/S53 domain 2 110 IPR036852 GO:0004252|GO:0006508
Cca08g00280 506 Pfam Fibronectin type-III domain 421 506 IPR041469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00280 Cca-Chr8 4055004 4056598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00280 1 496 Subtilisin-like Serine Gene Family AT3G14240 38.645 1.38e-104 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00280 - - ccaj:109814699 821.231