Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00279 ATGAGCGAAAACACAGAGACCCAGAAGCGTGCTGGTGAGACAGAAAGCAAGGACGACGTTGTTGAGTCGAAGAAGCCAAAGATCGAATCTTGCGAAAGGTATTCCGTTGACAATGGCACAAAGGAACCATCTTTCCTCGTTGAAGCGGATGCCGCAGAAGATAAGGGGTCCAGGCACACCATGGAAGATGCATCTGTCGTGCTTCTCGACGCAAGCTTAGATTACCCTGGAAAATTGAGATGTGCACACTTTGCAATTTATGATGGACATGGTGGGCGGTTAGCTGCAGAATACGCCCAAAAGCATTTGCATCAAAATTTGGATGTGAAGACAGCTAAACGATCTATTCTGAATGGTTTCCATAAAACTGATGAGTCTCTTCTTCAAGAAAGTGCTGAAGGGGGATGGCAGGATGGTGCTACAGCTGTATGTGTTTGGGTATTGGGATCAAAAGTTTTTGTTGCAAATATAGGAGATGCTAAAGCAGTATTAGCTCGGTCAACTGATGGATCCCGAAATCACTCAGATGGTGTGCAGGTGCTGAAGGCCATTGTTTTGACTAGAGAACACAAACCTATCTTCCCACTGGAGCGTGCACGCATTCAGAAGTCAGGTGGTTTTGTGAGCCAAGATGGACGGTTGCAAGGGCGTCTAGAAGTTTCTAGGGCATTTGGAGATCGCCAGTTCAAAAAGGTGGGTGTTGTTGCTACCCCAGATCTATATTCATTTGACCTTTCTGATAGAGAGCATTTCATCATTCTTGGCTGTGATGGCTTGTGGGGGGTGTTTGGTCCCAGTGATGCTGTTGATTTTGTTCAGAAGTTATTGAATGAGGGGCTACCTGTTACCACTGTGAGCCGCCGTCTTGTAAAGGAAGCGGTTCGTGAGCGTCGCTGTAAAGATAACTCTGCTATTCTGATACATCGTATAACACAACTAACTACCGATGGATTTCACATTGTGTCTAGACTTGCACTAAATATTGGTGTCAGCCAAGTTGTTTACCCTGTTTATCGAAATTTGATTGCCTTGCTTCTGTTAAGCCCATTTGCTTATTTTTTAGAGAAGAATCAAAGGCCACCCCTTACTTTATCTTTACTGGTTCAGTTCTTCCTACTAGCATTACTGGGGATCACTGCAAACCAAGGGTTTTACTTGTTGGGACTATACTATGCCTCTCCAACTTTTGCTTCTGCATTGCAAAACTCGGTTCCAGCGATCACTTTTGTCTTGGCCATGGCTTTAAGTCTAGAGGAAGCCAACATCACAAGGAGAGATGGATTGGCAAAAGTTCTTGGAACCATTGCTAGTGTGGGGGGTGCCACAATAATTACTCTTTACAAAGGTCCTCCTCCTCTTCACCTGCAGAAGGACCAAATACAAGGAGACACTTCAGATGTAGATCAGTCTCCAACAAAAATGCAAAATTGGACTTGGGGTTGCATATACTTGCTTGGACATTGTCTATCATGGGCTGGCTGGATAGTTTTTCAGGCTCCTGTGGTGAAGAAGTATCCAGCAAAACTAACCCTCACTTCTTTTACATGCTTCTTTGGATTGATCCAATTCTTGATCATAGCAGCCTTTGCTGAAAATGACTTGGAAAATTGGAAGATACAGTCACTAGAGGAGCTTTTCATCATTCTATATGCTGGAGTTGTAGCATCTGGCATTGTCATATCTCTCCAAACATGGTGCATTCAAAAGGGTGGTCCTGTGTTTGTTGCTGTCTTTCAGCCTGTGCAAACTATTCTAGTTGCTGTCTTGGCAGCCCTAATTCTCGGGGATCAGCTATACTCCGGAGGGCTTATTGGTGCAATTCTCATTGTGCTTGGTCTATACTTAGTCCTATGGGGCAAAGCCAATGAAAATAAAGTGACTGAGCCATCTCTAACAAAACCCTTGCTTAAGACAGAGGAAGAGAGTAAAGAAACTGATGCAGCTCCAAAGGACATACCATGA 1962 0.4419 MSENTETQKRAGETESKDDVVESKKPKIESCERYSVDNGTKEPSFLVEADAAEDKGSRHTMEDASVVLLDASLDYPGKLRCAHFAIYDGHGGRLAAEYAQKHLHQNLDVKTAKRSILNGFHKTDESLLQESAEGGWQDGATAVCVWVLGSKVFVANIGDAKAVLARSTDGSRNHSDGVQVLKAIVLTREHKPIFPLERARIQKSGGFVSQDGRLQGRLEVSRAFGDRQFKKVGVVATPDLYSFDLSDREHFIILGCDGLWGVFGPSDAVDFVQKLLNEGLPVTTVSRRLVKEAVRERRCKDNSAILIHRITQLTTDGFHIVSRLALNIGVSQVVYPVYRNLIALLLLSPFAYFLEKNQRPPLTLSLLVQFFLLALLGITANQGFYLLGLYYASPTFASALQNSVPAITFVLAMALSLEEANITRRDGLAKVLGTIASVGGATIITLYKGPPPLHLQKDQIQGDTSDVDQSPTKMQNWTWGCIYLLGHCLSWAGWIVFQAPVVKKYPAKLTLTSFTCFFGLIQFLIIAAFAENDLENWKIQSLEELFIILYAGVVASGIVISLQTWCIQKGGPVFVAVFQPVQTILVAVLAALILGDQLYSGGLIGAILIVLGLYLVLWGKANENKVTEPSLTKPLLKTEEESKETDAAPKDIP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00279 653 PANTHER WAT1-RELATED PROTEIN 311 631 IPR030184 GO:0016021|GO:0022857
Cca08g00279 653 SUPERFAMILY PP2C-like 46 307 IPR036457 -
Cca08g00279 653 SUPERFAMILY Multidrug resistance efflux transporter EmrE 338 446 - -
Cca08g00279 653 MobiDBLite consensus disorder prediction 632 653 - -
Cca08g00279 653 SMART PP2C_4 37 307 IPR001932 -
Cca08g00279 653 MobiDBLite consensus disorder prediction 6 27 - -
Cca08g00279 653 ProSiteProfiles PPM-type phosphatase domain profile. 48 309 IPR001932 -
Cca08g00279 653 SUPERFAMILY Multidrug resistance efflux transporter EmrE 541 621 - -
Cca08g00279 653 CDD PP2Cc 52 308 IPR001932 -
Cca08g00279 653 MobiDBLite consensus disorder prediction 634 653 - -
Cca08g00279 653 MobiDBLite consensus disorder prediction 1 27 - -
Cca08g00279 653 Pfam Protein phosphatase 2C 52 298 IPR001932 -
Cca08g00279 653 PANTHER WAT1-RELATED PROTEIN 311 631 - -
Cca08g00279 653 Pfam EamA-like transporter family 479 617 IPR000620 GO:0016020|GO:0016021
Cca08g00279 653 Pfam EamA-like transporter family 337 444 IPR000620 GO:0016020|GO:0016021
Cca08g00279 653 Gene3D - 29 315 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00279 Cca-Chr8 3953193 3964762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00279 291 647 Nodulin-like Gene Family AT3G18200 63.144 2.94e-159 461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00279 08 3953193 3964762 Cca08g00279 08 3953193 3964762 ECH