Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00273 ATGTCTCACTTTGGACGGTCTGGTCCTCCAGACATTTCCGACACTTACTCTCTTCTCGTTCTCAACATCACCTTCCGCACCACCGCCGATGACCTATTCCCTCTCTTCGATAAGTATGGGAAGGTTGTCGACATCTTCATTCCCAAAGATCGAAGGACCGGTGAGTCGAGGGGTTTTGCTTTTGTGCGTTACAAGTATGCTGATGAGGCTCAGAAGGCCGTTGATAGGCTCGATGGAAGAATGGTTGATGGTCGTGAAATAACTGTCCAGTTTGCAAAATATGGGCCTAATGCTGAGAGGAtTCACAAAGGAAGGATTATTGAAACAGCCGAGAGATCAAGGCACAGGTCAAGGAGCCGCAGTCCCAGGAAAAGGTATCGTGATGATTACAGAGACCGGGATTATAAGAGGAGAAGTCGTAGCAGAAGCTATGATAGGTATGAACGTGAAAGGCACCGTGGGAGAGACAAAGATTATCGTCGTAGAAGCAGGAGCCGAAGTACTAGTCTTGATTACAAGGGTCGTGGGAGGGGACGCTTTGACGATGAGCGTCATAGTAGAAGCCGGAGCAGATCAGTTGATAGCCGCTCCCCTGCACAACGCAGTCCTAGTCCTCGAAGGAGTCCTTCCCCTCAGAGGAGCACTTCCCCTCAAAGGAGTATTTCCCCTAGGAAAAGTCCACAGGGTGAAAGTCCGGCAAATCATAGCCCTGGTGGACATTCTCCTACCCCTCGCAGTGTCTCACCACGTGGTCGCCCTGATGCTTCACGAAGCCCTTCCCCTCGTAATTCAAATGGTGATGAATAA 807 0.5019 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETAERSRHRSRSRSPRKRYRDDYRDRDYKRRSRSRSYDRYERERHRGRDKDYRRRSRSRSTSLDYKGRGRGRFDDERHSRSRSRSVDSRSPAQRSPSPRRSPSPQRSTSPQRSISPRKSPQGESPANHSPGGHSPTPRSVSPRGRPDASRSPSPRNSNGDE 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00273 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Cca08g00273 268 SMART rrm2_1 17 90 IPR003954 GO:0003676
Cca08g00273 268 Gene3D - 4 105 IPR012677 -
Cca08g00273 268 SMART rrm1_1 17 90 IPR000504 GO:0003723
Cca08g00273 268 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 268 - -
Cca08g00273 268 MobiDBLite consensus disorder prediction 195 243 - -
Cca08g00273 268 MobiDBLite consensus disorder prediction 123 194 - -
Cca08g00273 268 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 268 - -
Cca08g00273 268 SUPERFAMILY RNA-binding domain, RBD 8 100 IPR035979 GO:0003676
Cca08g00273 268 MobiDBLite consensus disorder prediction 103 268 - -
Cca08g00273 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00273 Cca-Chr8 3850232 3854406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00273 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 6.21e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00273 K12891 - gmx:100778928 348.977