Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00271 ATGTCTTACTCTCTATTAATCATTGCTGAGAAAGGTGGTATTGATGCAGTACTCAGATATATAGATGACAGTGGTGAACAATGGAACAAAGTTGTGGCCAAAGTTTGTTGCTCATTGCTTTCAAAGATAGCAGATGAACTAGAACATTTGTTGGACGATGATAATAACATGGCTGAAATGTACTTGACACAAAAGCTTAATGGTCGTTTATTGGAGAAGGCATCATTTAAAGAAGGGTACAATTACGAATTTGAAGAGAACGATCAAAGTGATGAATCATATTCGAAAAAGTTTGACAAATACCATTATCATAAACTTGATGTTGAGGAATTGGAAATGCTTCTAGAAGCATATTTTGCACAGACTAATGGAATCTTACAACGATTGTCTAGTTTAAATTTGTTCTCTGAAGCTGAAACTAACCTTGCCATAAATGTGCTTCCTGGCTTATCTGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTCCAACTGGGTATATTAATTGAGAATATGAGGCGTGAAGGATTTGAGTTATCTGTCTCTCCGCCTAAAGTCATGTATAAAACTAAAAATGGTCGGAAGCTTGAGCCCGTAGAAGAAGTCACTATTGAGGGGCCTGGTTGGGTATAG 630 0.3714 MSYSLLIIAEKGGIDAVLRYIDDSGEQWNKVVAKVCCSLLSKIADELEHLLDDDNNMAEMYLTQKLNGRLLEKASFKEGYNYEFEENDQSDESYSKKFDKYHYHKLDVEELEMLLEAYFAQTNGILQRLSSLNLFSEAETNLAINVLPGLSESFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTKNGRKLEPVEEVTIEGPGWV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00271 209 Gene3D Magnesium transport protein CorA, transmembrane region 30 142 - -
Cca08g00271 209 PANTHER ELONGATION FACTOR FAMILY PROTEIN 134 204 - -
Cca08g00271 209 Gene3D Elongation Factor G (Translational Gtpase), domain 3 151 187 - -
Cca08g00271 209 SUPERFAMILY EF-G C-terminal domain-like 134 185 IPR035647 -
Cca08g00271 209 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 134 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00271 Cca-Chr8 3837612 3841501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00271 40 147 MRS2 Gene Family AT3G19640 34.000 1.40e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00271 K06207 - ccaj:109800230 335.88