Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00265 ATGCCTGTTGTGACAGAAGACATGAAATGGAGAAGACCAAGAAGACAGTTGAGGCACCCCATTTCAGAAACTGATCCAAACCCTCTCAACAAATCATCTCACACCAAATCCACCATCTCCTCTCTCTTGTCCTCTTTCTCCACCTCCAGCGAAACCACACATGCCAGAGACCAAAACAACAACAAAAGTAACAGAAAATTCTCTGCAGCCACCCTGAGAGGGCTCGGTTGTAGCGCCGCCGCGTCGCAGAAGGTGTCGGTGCCGGCGGTCATTCGGTCCTCCGCGGATTGGGAAGGGAAGAGGGGCAGGAAGAAGAAGAACAGTGATGATGATGGGTCTGCTGTGGACTTTCAAGATGTCTGGTGTGGCCCTGGAATTGgcttctcaactgatgctgcatctgcatctgTGGACTGTGTTGTGGCTAGGAGGAATGTGTCTGCAAGAGGAAAACTTGATATGGTGGAGAGGCTCACACACAGGGAGCGTCCATCTTATTTTGGAAGGCGCACTGTAAAGCCAGAAAGCTTCTCCTTTCTTGATGATGATCCTGAGGTTTTCACATCACGCCCTGGATTAGAGCCTTTTCGAACTGCTAGATTCTATCGCCATGTTCCACATCCTTCTTCTGAAGGTCTTGCTGAGATAATGATAATTCAAGGAAGAATAATGATGGGTGGACGACTAAACTCACACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAGCAATTGCTTGAACTGGGTGAGAGAATCGGTTATGTCAACACTGGACTCAAGGAAGATGAGATGGGACTCAGCATAAGGAAAGTTAAGCTTTCAAGTTCAAATGATGCACCAAAGCATCAAATGGACAAAAAGTGCAGCGTTTGTCAGGAAGAGTATGAATCAGAAGATGAGTTGGGGAGATTGAAGTGTGAACACAGCTATCATTTTCAATGTATAAAACAATGGCTTGTGCATAAAAACTTCTGCCCAGTTTGTAAGCAAGAAGTTGTGGTTCGACACTGA 1026 0.4474 MPVVTEDMKWRRPRRQLRHPISETDPNPLNKSSHTKSTISSLLSSFSTSSETTHARDQNNNKSNRKFSAATLRGLGCSAAASQKVSVPAVIRSSADWEGKRGRKKKNSDDDGSAVDFQDVWCGPGIGFSTDAASASVDCVVARRNVSARGKLDMVERLTHRERPSYFGRRTVKPESFSFLDDDPEVFTSRPGLEPFRTARFYRHVPHPSSEGLAEIMIIQGRIMMGGRLNSHDQFRDWRLDVDNMSYEQLLELGERIGYVNTGLKEDEMGLSIRKVKLSSSNDAPKHQMDKKCSVCQEEYESEDELGRLKCEHSYHFQCIKQWLVHKNFCPVCKQEVVVRH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00265 341 MobiDBLite consensus disorder prediction 95 114 - -
Cca08g00265 341 MobiDBLite consensus disorder prediction 96 113 - -
Cca08g00265 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 340 IPR013083 -
Cca08g00265 341 MobiDBLite consensus disorder prediction 7 21 - -
Cca08g00265 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 341 IPR045191 GO:0061630
Cca08g00265 341 SUPERFAMILY RING/U-box 292 339 - -
Cca08g00265 341 MobiDBLite consensus disorder prediction 23 65 - -
Cca08g00265 341 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Cca08g00265 341 SMART ring_2 293 333 IPR001841 -
Cca08g00265 341 Pfam Ring finger domain 292 334 IPR001841 -
Cca08g00265 341 MobiDBLite consensus disorder prediction 1 65 - -
Cca08g00265 341 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 3 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00265 Cca-Chr8 3734428 3741019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00265 4 248 C3H Transcription Factor Family AT1G73760 39.286 9.51e-44 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00265 - - gmx:100818517 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00265 08 3734428 3741019 Cca09g02780 09 53441259 53445220 ECH
Cca08g00265 08 3734428 3741019 Cca08g00265 08 3734428 3741019 ECH