Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00255 atgggaatgatcaacaacagCCACATTTTACCTCACTTACACTCAGCATCACAACGACCCTGCAACGTTAGTAAGTTGAAGTGGCGAATCTTCCCCTACAAGGAACTTGCAAAAGCCACAAATAATTTTGATCAATTGCATTGCCTTGGAAAGAGAGGCTCAGCCATTGAATATCACGGAAAACTTGATGATGGACGTGAGATTATAGTCCAACGCTTCAAAGAAGACAAGCGCTACACATTACAACAGTTTGTCAATGAAACTGTTATCCTAAATTACTTGCCTCACAAAAATATTGTGTCAATTTATGGGTGTACTTCTCATCACGAGGAATCTCTGCTGGTGCATGAATACCTAGTCAATGGCAACCTTGCTGCTCATCTACAAAGTGAAAGGGCTGTAAACAATACACTAACTTGGCTTACACGATTGGATATAGCCATTGATATTGCAAATGCATTGGACTATCTTCACTATTATGGCATCATCCATCGTAATGTGAAGTCCAGAAATATTCTCCTAGATGTTAACTTTTGTGCTAAAGTTGCTAACCTTCATTTATCACGGAAACTTCCAGATGGAGTTCCTGTCAATGGCACCCATGTTACTAGTGATAGAGTAGGGTCATGTGGTTATATAGACCCAGAGTATTTGACAAAAGGCCAACTTAGTGTAAAAAATGATGTTTATAGCTTTGGGGTGGTGTTGTGTGAGCTTCTATCATCGAATCTGGCAAAATATTGGGTTTTGAATGAAGAGGATAATATTGCTTCCCTTTTACACAGAAAAATTGAAAACCAAGCTTTGCTGGAGCTGTTCGATCCAAGTCTTGGATTCCAATCAAACCTTCAGATCAAGCGAATGATGACTGCCACAGCCAAGCTTGCACTTTTTTGCATGCAATGTCCACAACAATCAAGGCCAGACATGGAGCAGGTGGTAGAGATTCTCAATGGAATAAAGCAAGGGAGATATGAAACAAACTCAAAAACAAAAGCTTTGAAAATCTTCCACCATGCTGAACTTCAAGAAGCTACTGACAATTTTAACACTTGCCTTGGAAAGGGAGGGTATGGCAGCGTGTACTATGGAAAACTACAAGATGGGCGAGAGTTTCACTTTATGGCCGCACTTCTCACCATAGCAAATCTGGTTTCACTTTATGGCCGCACTTCTCGCCATAGCAACAAACACATGCTAGTGTACGAGTATATCTCTAATGGCACTCTTTCCAAACATCTTCACGAATCTTCCAGTGGTAAACTACCATGGCAGGCTAGATTGAATATTGCCATTGAAACTGCAACTGCTTTGGTATATCTTCATGACTCAGTAGGAACTCGAGCTTACATGGATCCTGACTATTATGAATCTGGAAGGGTCAGTGACAAAAGTGATGTCTTTAGCTTTGGGGTGGTCTTGTTTGAACTCATATCATCCAATCCTCCAGGTTCAATGGTAGGCACCGATTATGTTACTCTTGCACAGTTTGCAAAGAGAAAAATCTTAAACCAGGAATTAAATGCGGTAGTGGATCCAAGCTTTTGGCTTGCTTCTGACAAAAACATGATGGAAATGGTAACAGCTGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGAGTTCAGACCATCAATGAAACAGGTGCTAGAGACACTAGAGGGCATAAGTAAAGGAACATGGGGATTCAGCCAGATAACATAG 1710 0.4058 MGMINNSHILPHLHSASQRPCNVSKLKWRIFPYKELAKATNNFDQLHCLGKRGSAIEYHGKLDDGREIIVQRFKEDKRYTLQQFVNETVILNYLPHKNIVSIYGCTSHHEESLLVHEYLVNGNLAAHLQSERAVNNTLTWLTRLDIAIDIANALDYLHYYGIIHRNVKSRNILLDVNFCAKVANLHLSRKLPDGVPVNGTHVTSDRVGSCGYIDPEYLTKGQLSVKNDVYSFGVVLCELLSSNLAKYWVLNEEDNIASLLHRKIENQALLELFDPSLGFQSNLQIKRMMTATAKLALFCMQCPQQSRPDMEQVVEILNGIKQGRYETNSKTKALKIFHHAELQEATDNFNTCLGKGGYGSVYYGKLQDGREFHFMAALLTIANLVSLYGRTSRHSNKHMLVYEYISNGTLSKHLHESSSGKLPWQARLNIAIETATALVYLHDSVGTRAYMDPDYYESGRVSDKSDVFSFGVVLFELISSNPPGSMVGTDYVTLAQFAKRKILNQELNAVVDPSFWLASDKNMMEMVTAVAELAFQCVQCPKEFRPSMKQVLETLEGISKGTWGFSQIT 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00255 569 Gene3D Transferase(Phosphotransferase) domain 1 119 331 - -
Cca08g00255 569 Gene3D Phosphorylase Kinase; domain 1 332 373 - -
Cca08g00255 569 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 24 444 IPR044652 -
Cca08g00255 569 PANTHER TYROSINE KINASE FAMILY PROTEIN 24 444 - -
Cca08g00255 569 Gene3D Transferase(Phosphotransferase) domain 1 445 563 - -
Cca08g00255 569 Gene3D Transferase(Phosphotransferase) domain 1 374 444 - -
Cca08g00255 569 SUPERFAMILY Protein kinase-like (PK-like) 9 317 IPR011009 -
Cca08g00255 569 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 445 569 IPR044652 -
Cca08g00255 569 ProSiteProfiles Protein kinase domain profile. 43 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00255 569 ProSiteProfiles Protein kinase domain profile. 310 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00255 569 Gene3D Phosphorylase Kinase; domain 1 17 118 - -
Cca08g00255 569 Pfam Protein tyrosine and serine/threonine kinase 370 443 IPR001245 GO:0004672|GO:0006468
Cca08g00255 569 Pfam Protein tyrosine and serine/threonine kinase 63 316 IPR001245 GO:0004672|GO:0006468
Cca08g00255 569 Pfam Protein tyrosine and serine/threonine kinase 449 555 IPR001245 GO:0004672|GO:0006468
Cca08g00255 569 SUPERFAMILY Protein kinase-like (PK-like) 331 559 IPR011009 -
Cca08g00255 569 PANTHER TYROSINE KINASE FAMILY PROTEIN 445 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00255 Cca-Chr8 3602685 3614841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00255 334 558 Receptor kinase-like Gene Family AT1G25390 38.699 5.94e-49 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca08g00255 PK_Tyr_Ser-Thr 3.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00255 - - gmx:102666805 872.463