Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00254 ATGAAGTTGCAGTGTGATCTCTTCGCGTGTTGCTTCACTAGCACATCTTCTGATACAATTCCAAAAAAGCACAGTCAGTTCAAATGGCGAATTTTTCACTACACGAAACTTGCAAAGTTCACCAATAATTTTGATCAATCTAATTTTCTTGGGGAGAAAGTCTTATACACCGAATATTACGGAGAACTTGAGGATGGACGTCAGATAATAGTCCAACGTTTTAAGGAAAATAAGCGCTACATATTGCAACAGTTTATCAAGGAAACTGTTATCCTAAATTACTTGCCTCACAAAAATATTGTGTCAATTTATGGATGTGCTTCTCATAACGAGGAATCTCTTCTAGTGCATGAAAACCTATCCAATGGCAACCTTGCTGCTTATCTTCAAAGGGAAATAGCCGGAAACAGCACACTACCTTGGCTGACACGTTTGGATATAGCCATTGATATTGCAAATGCATTGGACTACCTTCACTATTATGGCATCATCCACCGCAATGTGAAGTCCAGCAATATTCTCCTCGATGTTAACTTTTGTGCTAAAGTTGCTGGCCTTCATTTATCACGGAAACTTCCAGATGGAGTTCCTATCAGTGCCACCCATGTTACTAGTGATAGAGTAGGGTCACGTGGTTATATAGACCCAGAGTATTTGACGAAAGGCCAACTTAGTGTAAAAAATGATGTTTATAGCTTTGGGGTGGTGTTGTGTGAGCTTCTATCATCGAAGCTGGCAAAATATTGGGTTCTGAATGAAGAGGATAATCTTGCTACTCTTTTAAGCAGAAACATTGAAAGCTATGCTTTGATGGAGATGTTTGATCCAAGACTTGGCTTTCAATCAGACCTTAAGACCATGCATATGATGACTGCAACTGCTGAGCTTGCATTTCTGTGCATGCAATGTCCGCAAGAATTAAGGCCAAACATTGAAGAGGTGCTAGAGATTCTCGATACCTTAAAGCAAGGGAGATATGAAACAAATTCTTACTCAACAAAAGCTTTGAAAATCTTCCACCATGCTGAACTTGAAGAAGCTACCAACAATTTTGACACTTGTATTGGAAAGGGAGGGTATGGCACAGTGTACTATGGAAAACTTAAAGATGGGCGAGAGGTTGCAATAAAATGTTTCCATGACGAGAACAAGAGAGAGACCATTAAGCAATTCTTGAAAGAAACGCAGATCTTAGGTCTCTTGCACCATCAAAATCTAGTTTCACTTTATGGCCACACTTCTCGCCGTAGCAAAAAACACATGCTAGTGTACGAGTACATCTCCAATGGCACTCTATCCGAACATCTTCATGAATCTTCCAGGGGTAAACTACCATGGCATACCAGATTAAATATTGCCATTGAAACTGCAACTGCATTGGTATATCTACATGACTCGGGTATCATCCACCGTGATATAAAAGGGAGTAACATTCTGTTGGATGAAAAATTTACTGCTAAAGTTGGAGATTTTGGATTCTCACGGTTTCTTCCAGATGTTGTTACTCATGTTTCAACCATTCCAGTAGGAACTCGTGCTTACATAGATCCTGACTACTTTGATACTGGAAGGGTCAGTGACAAAAGTGATGTCTATAGCTTTGGGGTGGTCTTGTTTGAACTCATATCATCTAACCGCAGCAGGTTAATGGAGGGCACAGATTATGTTACTCTTGCAGATTTTGCAAAGAAAAAAATCTTGAACAAAGAATTAAAGGAGGTAGTGGATCCAAGATTTTGGTTTAGTTCTGACAAAAACATTTTGGAAATGGTAACAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTCTCCCAAGCAATTCAGACCATCCATGAAACAGGTGCTGGAGACCCTTGAGGGCATAAGGAAAGGAACTTGGTGA 1884 0.4002 MKLQCDLFACCFTSTSSDTIPKKHSQFKWRIFHYTKLAKFTNNFDQSNFLGEKVLYTEYYGELEDGRQIIVQRFKENKRYILQQFIKETVILNYLPHKNIVSIYGCASHNEESLLVHENLSNGNLAAYLQREIAGNSTLPWLTRLDIAIDIANALDYLHYYGIIHRNVKSSNILLDVNFCAKVAGLHLSRKLPDGVPISATHVTSDRVGSRGYIDPEYLTKGQLSVKNDVYSFGVVLCELLSSKLAKYWVLNEEDNLATLLSRNIESYALMEMFDPRLGFQSDLKTMHMMTATAELAFLCMQCPQELRPNIEEVLEILDTLKQGRYETNSYSTKALKIFHHAELEEATNNFDTCIGKGGYGTVYYGKLKDGREVAIKCFHDENKRETIKQFLKETQILGLLHHQNLVSLYGHTSRRSKKHMLVYEYISNGTLSEHLHESSRGKLPWHTRLNIAIETATALVYLHDSGIIHRDIKGSNILLDEKFTAKVGDFGFSRFLPDVVTHVSTIPVGTRAYIDPDYFDTGRVSDKSDVYSFGVVLFELISSNRSRLMEGTDYVTLADFAKKKILNKELKEVVDPRFWFSSDKNILEMVTAVAELAFQCVQSPKQFRPSMKQVLETLEGIRKGTW 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00254 627 Gene3D Transferase(Phosphotransferase) domain 1 120 323 - -
Cca08g00254 627 Gene3D Transferase(Phosphotransferase) domain 1 427 626 - -
Cca08g00254 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Cca08g00254 627 ProSiteProfiles Protein kinase domain profile. 44 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00254 627 CDD STKc_IRAK 355 622 - -
Cca08g00254 627 Pfam Protein tyrosine and serine/threonine kinase 352 619 IPR001245 GO:0004672|GO:0006468
Cca08g00254 627 Pfam Protein tyrosine and serine/threonine kinase 63 260 IPR001245 GO:0004672|GO:0006468
Cca08g00254 627 ProSiteProfiles Protein kinase domain profile. 349 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00254 627 SMART serkin_6 44 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00254 627 SMART serkin_6 349 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00254 627 PANTHER TYROSINE KINASE FAMILY PROTEIN 26 627 - -
Cca08g00254 627 SUPERFAMILY Protein kinase-like (PK-like) 327 622 IPR011009 -
Cca08g00254 627 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 26 627 IPR044652 -
Cca08g00254 627 Gene3D Phosphorylase Kinase; domain 1 324 426 - -
Cca08g00254 627 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Cca08g00254 627 SUPERFAMILY Protein kinase-like (PK-like) 19 318 IPR011009 -
Cca08g00254 627 Gene3D Phosphorylase Kinase; domain 1 19 119 - -
Cca08g00254 627 PRINTS Tyrosine kinase catalytic domain signature 424 437 IPR001245 GO:0004672|GO:0006468
Cca08g00254 627 PRINTS Tyrosine kinase catalytic domain signature 462 480 IPR001245 GO:0004672|GO:0006468
Cca08g00254 627 PRINTS Tyrosine kinase catalytic domain signature 529 551 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00254 Cca-Chr8 3599139 3601574 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00254 336 623 Receptor kinase-like Gene Family AT1G25390 51.701 2.50e-92 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca08g00254 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00254 - - gmx:100801413 992.645