Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00253 ATGGGATGTAAACACTTTGAGTGGTGCTGTTTCACTAGCACTTCTTCTGACAAATTTCCAAAGCACAGTAAGTGGCGAATCTTGCCTTACAAGAAACTTTCAAAAGTCACAAACAATTTTGATCAATCTCATTGTCTTGGAAAGAGAGGCTTTGCCACTGAATATTACGGAAAACTTGAGGATGGACGTGAGATTACAATCCAGTACTTTAATGCAGACAAGCACCACATATTGCAAAAGTTTATCAATGAAACTACTATCCTAAATTACTTGCCACACAAAAATATTGTTTCAATTTATGGATGTGCTTCGCATAACGAGGAATCTCTTCTAGTGCATGAACACCTATCCAATGGCAACCTTGCTGCTCATCTTCAAAGTGAAATAGCCGGAAACAGCACACTACCTTGGCTGACACGTTTGGATATAGCCATTGATATTGCAAATGCATTGGACTACCTTCACTATTATGGCATCATCCACCGCAATGTGAAGTCCAGCAATATTCTCCTAGATGTTAACTTTTGTGCTAAAGTTGCTAACCTTCATTTATCAAGGAAACTTCCAGATGAAGTTCCTGTCTATGCCACTCATGTTACTAGTGATATAATTGGGACATGTGGTTATATGGACCCAGAGTTGACAAATGGCCGGCTTAGCGTAAAAAATGATGTTTATAGCTTTGGGGTGGTGTTGTGTGAACTGCTAACATCAGTGCTAGCAAAATACTGGCTTCTGAATGAAGAGGGTAATCTTTCTACCCTTATAAACAGAAATTTTGAAAACCAAGCTTTGGTGGAGTCGTTTGATCCAAGACTTGGTTTTGAATCCAACCTTAAGATCAAATGGATGATGACTGCTACAGCTGAGCTTGCACATCAAGGGAGATATGAAACAAACTCAACAAAAGCCTTGAAAATCTTCCACCATGCTGAACTTGAAGAGGCTACAAACAATTTTGACACTTGTCTTGGAAAGGGAGGGTATGGCACAGTGTACTATGGAAAACTTCGAGATGGGCGAGAGGTTGCAATTAAATGTTTCCATGATGAGATAGAGACAGAAAAGACCATTAAGCAATTCATGAAAGAAACTGAGATCTTATGTCTCTTGCATCATCAAAATCTAGTATCACTTTATGGCCGCACTTCTCGCCATAGCAACAAACACATGCTGGTGTACGAGTACATCTCCAATGACACTCTTTCTAAACATCTTCGAGAATCTTCCTGTGGTAAACTTCCATGGCATACTAGATTGAATATTGCCATCGAAACTGCAACTGCCTTGGTGTATCTTCATGACTCAGGTATCATCCACCGTGATGTAAAAGGGAGTAACATCCTCTTGGATGAAAAATTTACTGTTAAAGTTGCAGATTTTGGATTCTCACGGTCTCTTCCAGATTATGCTACTCACGTATCCACTATACCAGTAGGGACTCGTGCTTACATAGATCCTGACTACTATGAATCTGGAAGGGTCAGTGACAAAAGTGATGTCTATAGTTTTGGGGTGGTCTTGTTTGAACTCATATCATCCAACCCCCCAAGTTTAATGGAAGGCACAGATTATGTTACTCTTGCACAGTTTGCAAAGAGAAAAATATTAAACAAGGAATTAAATGCGGTAGTGGATCCAAGTTTTTGGTTTGGTTCTGACATGAACATGACAGAAATGATAACAGCAGTGGCAGAGTTAGCCTTTCAGTGTGTGCAATGTCCCAAGGAACTCAGACCATCGATGAAACAGGTGCTAGAGACCCTAGAGGGCATTAGGAAAGGAACATGGGGATTCAACCAGATAACATAG 1812 0.4012 MGCKHFEWCCFTSTSSDKFPKHSKWRILPYKKLSKVTNNFDQSHCLGKRGFATEYYGKLEDGREITIQYFNADKHHILQKFINETTILNYLPHKNIVSIYGCASHNEESLLVHEHLSNGNLAAHLQSEIAGNSTLPWLTRLDIAIDIANALDYLHYYGIIHRNVKSSNILLDVNFCAKVANLHLSRKLPDEVPVYATHVTSDIIGTCGYMDPELTNGRLSVKNDVYSFGVVLCELLTSVLAKYWLLNEEGNLSTLINRNFENQALVESFDPRLGFESNLKIKWMMTATAELAHQGRYETNSTKALKIFHHAELEEATNNFDTCLGKGGYGTVYYGKLRDGREVAIKCFHDEIETEKTIKQFMKETEILCLLHHQNLVSLYGRTSRHSNKHMLVYEYISNDTLSKHLRESSCGKLPWHTRLNIAIETATALVYLHDSGIIHRDVKGSNILLDEKFTVKVADFGFSRSLPDYATHVSTIPVGTRAYIDPDYYESGRVSDKSDVYSFGVVLFELISSNPPSLMEGTDYVTLAQFAKRKILNKELNAVVDPSFWFGSDMNMTEMITAVAELAFQCVQCPKELRPSMKQVLETLEGIRKGTWGFNQIT 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00253 603 Gene3D Phosphorylase Kinase; domain 1 302 396 - -
Cca08g00253 603 PANTHER TYROSINE KINASE FAMILY PROTEIN 293 603 - -
Cca08g00253 603 ProSiteProfiles Protein kinase domain profile. 40 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00253 603 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Cca08g00253 603 SUPERFAMILY Protein kinase-like (PK-like) 18 244 IPR011009 -
Cca08g00253 603 Gene3D Phosphorylase Kinase; domain 1 12 115 - -
Cca08g00253 603 Gene3D Transferase(Phosphotransferase) domain 1 397 597 - -
Cca08g00253 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Cca08g00253 603 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 293 603 IPR044652 -
Cca08g00253 603 ProSiteProfiles Protein kinase domain profile. 318 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00253 603 SMART serkin_6 40 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00253 603 SMART serkin_6 318 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00253 603 PANTHER TYROSINE KINASE FAMILY PROTEIN 22 292 - -
Cca08g00253 603 Pfam Protein tyrosine and serine/threonine kinase 46 249 IPR001245 GO:0004672|GO:0006468
Cca08g00253 603 Pfam Protein tyrosine and serine/threonine kinase 321 589 IPR001245 GO:0004672|GO:0006468
Cca08g00253 603 SUPERFAMILY Protein kinase-like (PK-like) 300 593 IPR011009 -
Cca08g00253 603 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 22 292 IPR044652 -
Cca08g00253 603 Gene3D Transferase(Phosphotransferase) domain 1 118 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00253 Cca-Chr8 3590416 3592990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00253 305 593 Receptor kinase-like Gene Family AT1G25390 52.203 9.83e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca08g00253 PK_Tyr_Ser-Thr 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00253 - - gmx:100801413 1046.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00253 08 3590416 3592990 Cca08g00253 08 3590416 3592990 ECH