Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00249 ATGCCTCCTCCTTCTTCCTTCATCAAGACCCTTTTCTTGTTCTTCCTCATCTTCACAACATATCTATCTAGTGATGCTGAAGGGTACACAACATGTGAACCTTTTAGCTGTGGGAAATTCAACAACATAAGCTTCCCATTTTGGAGAAGCGACCAACCAGAATATTGTGGTCATCCAAAGCTCAAGCTTGATTGCCAACAAGACAACGTGACAATTGACATGATGTCACATACGTTCTATGTTATTGATATTAAGCCAACATCTAAGGTTTTGAAGATTGCAAGCGTGGATTTATTGGATGACCCTTGTCCTAATGAGTACATCAGTTTCGAGTTGGATTTTGATTTCTTCAACTACACTTCCAACGATGGAAACTATACTTTGTTATATGACTGCAGTCCAAATCCATTAAAGTATAGTTTGAATCTCGATGATTTAAAACCATTTAGTTGCCCCATAGATAGTGGTTTTCAAGAAGCATTCTTTGTGTCAAGTAGTGATGTGGCTAATTTGATGGATCTGGTGTGCAATAAAAACATCAGTGTTAGTGTCCTAAGAGAGGCTGTGAAGGATACTTCGTTTGTGAAAGATGTTATAAAAGAAGGATTTGAGGTTTTGTGGAGTGGTGTGGATGAAGACCAATGTGATGGTTGCAAACAACATGGTGGGAGATGTGGACACAATGCCTCTGTGGATGAATTTATCTGCCTTTGTTATAATCAGCAATCTTATGGTGGGGGTTGTAGCAAAAGCTTAGCAAGGTCTCCATTAGcagcaccaacaacaacaactagaccaacaccTGCAAATTCGCTGCTACCTCCTAACTCTCTAATATTTCCAAAAAATTCTCCTCTGTCTCCACATGCTCCGAGTGTTGGTTCTGCTGTGGTGGGAGCACTTGCAGTGGGCATTGGCGTCTATCTCTATTGGCGTAGAAAGAAGAATAGTTATGTCACATATATACAATCTAGGAGCCTCTCTTTTGATCCATCTTTAAAAGACACTGAGAAGGGAACTCAAAGCTTTACTCAAAGCTTTGTACATGGGATGCACCTCTTCTCCTATGATGAACTTGAAGAGGCCACAAATTACTTTGACTCATCTAAAGAACTTGGAGAAGGGGGCTTTGGGACAGTGTATTATGGCAAACTGCGGGATGGGCGTTCTGTTGCAGTGAAGAGGTTGTATGAGAACAACTACAGGAGAGTTGAGCAGTTCATGAATGAAATTAAAATCCTAGCTCTGTTAAAACATCCAAATCTTGTGTCATTATATGGATGCACCTCTCGCCACAGCCGTGAACTTCTGCTTGTATACGAGTACATTCCTAATGGAACTGTTGCTGATCATCTTCATAGTGAGCGATCCAAACCTGGAACACTCCCTTGGCTCATTAGAATGAATATTGCTGTGGAGACTGCAAGTGCACTCACATATCTTCATGTTAAAGACATCATCCACAGAGATGTGAAAACCAACAACATTCTCCTCGACAGTAACTTTCGTGTCAAAGTGGCAGATTTTGGACTCTCACGTCTTTTTCCAGAACATGTCACCCATGTTTCAACAGCTCCACAAGGGACTCCAGGTTATGTGGATCCAGAGTACCATGAGTGCTACCAGCTTACTAACAAAAGTGATGTCTATAGCTTTGGAGTGGTGTTGGTTGAGCTGATATCATCTTTGCCTGCTGTTGATATCACAAGGCATAGACATGAAATCAATTTGGCCAACATGGCCATCAACAAGATTCACAGTCAGGCACTGCATGAGCTTGTGGACCCTACCCTTGGGTTTGAATCAGATTTCAAGGTAAGGAAAATGATAAATGCTGTGGCTGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGACATGAGACCTTCTATGGAAGAAGTGTTTGATACTCTGAAGGATATACAGAGTGATGGCAAACACAAAAGCCAGCCTGAGGTAATGGATATCTCAAGCACTGCTGATGATGTTGTGTTGCTGAAGGATAACCCTCCTCCACCATCACCTGATTCTAATGCCGTGAGCAAGTCAACAACACCAAATGCTAGTGGATAA 2073 0.41 MPPPSSFIKTLFLFFLIFTTYLSSDAEGYTTCEPFSCGKFNNISFPFWRSDQPEYCGHPKLKLDCQQDNVTIDMMSHTFYVIDIKPTSKVLKIASVDLLDDPCPNEYISFELDFDFFNYTSNDGNYTLLYDCSPNPLKYSLNLDDLKPFSCPIDSGFQEAFFVSSSDVANLMDLVCNKNISVSVLREAVKDTSFVKDVIKEGFEVLWSGVDEDQCDGCKQHGGRCGHNASVDEFICLCYNQQSYGGGCSKSLARSPLAAPTTTTRPTPANSLLPPNSLIFPKNSPLSPHAPSVGSAVVGALAVGIGVYLYWRRKKNSYVTYIQSRSLSFDPSLKDTEKGTQSFTQSFVHGMHLFSYDELEEATNYFDSSKELGEGGFGTVYYGKLRDGRSVAVKRLYENNYRRVEQFMNEIKILALLKHPNLVSLYGCTSRHSRELLLVYEYIPNGTVADHLHSERSKPGTLPWLIRMNIAVETASALTYLHVKDIIHRDVKTNNILLDSNFRVKVADFGLSRLFPEHVTHVSTAPQGTPGYVDPEYHECYQLTNKSDVYSFGVVLVELISSLPAVDITRHRHEINLANMAINKIHSQALHELVDPTLGFESDFKVRKMINAVAELAFQCLQSSKDMRPSMEEVFDTLKDIQSDGKHKSQPEVMDISSTADDVVLLKDNPPPPSPDSNAVSKSTTPNASG 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00249 690 Gene3D Transferase(Phosphotransferase) domain 1 443 664 - -
Cca08g00249 690 Pfam Protein kinase domain 367 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00249 690 ProSitePatterns Protein kinases ATP-binding region signature. 372 394 IPR017441 GO:0005524
Cca08g00249 690 Pfam Wall-associated receptor kinase galacturonan-binding 32 94 IPR025287 GO:0030247
Cca08g00249 690 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 9 680 - -
Cca08g00249 690 MobiDBLite consensus disorder prediction 642 690 - -
Cca08g00249 690 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 9 680 IPR044652 -
Cca08g00249 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Cca08g00249 690 SUPERFAMILY Protein kinase-like (PK-like) 342 638 IPR011009 -
Cca08g00249 690 ProSiteProfiles Protein kinase domain profile. 366 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00249 690 Gene3D Phosphorylase Kinase; domain 1 336 442 - -
Cca08g00249 690 Pfam Wall-associated receptor kinase C-terminal 170 240 IPR032872 -
Cca08g00249 690 SMART serkin_6 366 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00249 Cca-Chr8 3539858 3550720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00249 294 690 Receptor kinase-like Gene Family AT1G25390 58.780 5.51e-147 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca08g00249 Pkinase 9.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00249 - - gmx:100800873 993.801