Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00248 ATGGTGTTCTTTCCTTTCCACTTGTCCAATACTAATCTTAATCTCCGTCTCTTCTTTCTCTTCTCTGTAACTGTAATAACGCTTCTTCTTCCAACTAGAAGTGAAATCAATTTTAACACTTCGTCTGTGTTTGAGGGTAAAAAGCACACAAACAAGGTCTCGACAACAGACAAGGAACGCAATCTTAAAGTCGATGATGTCTTCACGGCGTGCTATCGGAGGAAAAATTGCAGGAGCAGTTTCATTACACGCACACGCTTACCGAGAAGTGACGGTGATTCTGCTAACGTGGCACCGCTAATTTACACAACCACGAAAGTATCGCTTGCGGCAACTTATACTGTGGTAACAGTTAATCCTAGTTCTAATGCTACAGCTTGCAGCACAGGTCGTTGCAATTCAACTTCTCCAACTCCATTCTATGTAACACCGCAGCCATTATCATCGCCACCACCACCATTGCGAACTCCACTCTATATAACACCACGACCATTATCATCTCCACCATCAAAATCACCACCAATGCTATCACCGCAACCAACATTATCACCACCACGAACATGGGTACCTGCATATTCATCGCCAAGTTCTTCTTTGTCACCATTGCCAATATCAAAACCAGTTGAAACACTTAAGGGTAATCTGATACGGAAAATCATTATAGGTGTTGCAAGTGCAGTAATGGGAGGATTCATGATATGCATCATAATTTGTTGTTTTAGATATAAGTCATTAGCCCGACCATTCAAATTTTTTAGGTCCACAAAGAGTAATCAAGATATTGAAGCATTCTTAAAAATTCATGGAGCTGTATCACAGAAAAGATACAAATTTTCAGAAGTAAAGAAAATGACCAATTCCTTCAAAGTTAAACTTGGTCAAGGTGGTTTTGGTGCAGTATATGAAGGAAAGCTACCCACTGGTTGTCCTGTGGCTATAAAGATATTGAATGCATCCAAAGGAAGTGGTGAAGACTTTATTAATGAGGTTGCTAGCATAAGTAGAACCTCTCATGTTAATATTGTTACACTTCTTGGATTTTGTTTGGAAGGCCGCAAGAAAGCTCTCATCTATGAGTTTATGGCTAATGGTTCCCTAGAAAAGTTTATCTACAAAGGAGGGCCAGAAACCATTGCATCTTTGAGTTGGGAGAATTTGTATCAAATCTCAATAGGGATTGCTCGTGGGTTGGAGTACTTGCACAGGGGATGCAACACTCGGATTTTGCATTTTGACATAAAACCACATAATATTCTTTTGGATGAGAATTTTTGTCCCAAAATATCAGATTTTGGGCTAGCAAAGCTGTGTCCTAGAAAAGAGAGCATTATTTCTATGTCAAATACAAGAGGGACAATGGGGTATGTTGCTCCAGAAATGTGCAATAGACATTTTGGTGGAGTTTCACACAAGTCTGATGTTTATAGCTATGGAATGATGTTGCTAGAAATGGTAGGAGGGAGGAAAAACATTAATGCTGAAGCCAGTCACACAAGTGAGTTATACTTCCCATATTTGGTATACAGAAGGCTTGAGTTGGATAATGATTTAAGACCGGATGAGGTGATGACCGTAGAAGAAAATGAGATTGCAAAGAGAATGACCATAGTGGGTTTATGGTGCATTCAAACGTTTCCGAATGATAGACCTACAATGAGTAAAGTGATAGATATGTTGGAAGGCAGCATGAATTCCTTGGAAATTCCTCCAAAACCTATGTTTTCTTCTCCTACCAGATCAGTGACGGAATCGTCCTCTTGA 1761 0.3975 MVFFPFHLSNTNLNLRLFFLFSVTVITLLLPTRSEINFNTSSVFEGKKHTNKVSTTDKERNLKVDDVFTACYRRKNCRSSFITRTRLPRSDGDSANVAPLIYTTTKVSLAATYTVVTVNPSSNATACSTGRCNSTSPTPFYVTPQPLSSPPPPLRTPLYITPRPLSSPPSKSPPMLSPQPTLSPPRTWVPAYSSPSSSLSPLPISKPVETLKGNLIRKIIIGVASAVMGGFMICIIICCFRYKSLARPFKFFRSTKSNQDIEAFLKIHGAVSQKRYKFSEVKKMTNSFKVKLGQGGFGAVYEGKLPTGCPVAIKILNASKGSGEDFINEVASISRTSHVNIVTLLGFCLEGRKKALIYEFMANGSLEKFIYKGGPETIASLSWENLYQISIGIARGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRKESIISMSNTRGTMGYVAPEMCNRHFGGVSHKSDVYSYGMMLLEMVGGRKNINAEASHTSELYFPYLVYRRLELDNDLRPDEVMTVEENEIAKRMTIVGLWCIQTFPNDRPTMSKVIDMLEGSMNSLEIPPKPMFSSPTRSVTESSS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00248 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Cca08g00248 586 ProSiteProfiles Protein kinase domain profile. 286 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00248 586 Pfam Protein kinase domain 289 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00248 586 Gene3D Transferase(Phosphotransferase) domain 1 361 568 - -
Cca08g00248 586 MobiDBLite consensus disorder prediction 161 182 - -
Cca08g00248 586 SMART serkin_6 286 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00248 586 MobiDBLite consensus disorder prediction 569 586 - -
Cca08g00248 586 SUPERFAMILY Protein kinase-like (PK-like) 271 560 IPR011009 -
Cca08g00248 586 Gene3D Phosphorylase Kinase; domain 1 260 360 - -
Cca08g00248 586 MobiDBLite consensus disorder prediction 567 586 - -
Cca08g00248 586 CDD STKc_IRAK 292 561 - -
Cca08g00248 586 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 209 585 - -
Cca08g00248 586 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524
Cca08g00248 586 PANTHER RUST RESISTANCE KINASE LR10-RELATED 209 585 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00248 Cca-Chr8 3528682 3538701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00248 193 575 Receptor kinase-like Gene Family AT4G18250 51.908 5.02e-128 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Cca08g00248 Pkinase 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00248 - - gmx:100799268 669.463