Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00245 ATGGCTGTGgcatcatcttccttgatctatgattatgaatatgatgtgttcctgagcttcagaggagaagatacccgttacggtttcaccggaaatctctacaacgccctccgtgacaacggaattcacacattcatcgacgacgaccaactccaaaaaggggacgagatcacatcagcacttgagaaggccatcgaacactcgagaattttcatcatcgtcctctctctcaactacgcttcttcctctttttgcttaaacgagctcacttacatccttcactgcactaagagaaaatctttgttggttttgcctctcttttataacatcgatccttctgaccttcgtcaccacagaggtagcttcggagaagcgttgaccaatcatgaaaacaatttcaaagctaagaaggaggggttggagcataacatggacaagctccacaaatggaagatggctcttcatcaagcagccagcttgtctggctatcatttcaaacaaggGGAtggatatgaatacgagtttattaaaaagatagttaaattggtatctagcaagattaaccgtgctcctttgcatgttgcggattacacggttggacttgagtctcgagtgctggaagtaaagttgcttctaaatgttgggtctgatgactgtgtccacatggttggaatccatggtattggtggaattggtaaaaccacacttgctgttgaagtttataattccattgctgaccattttgaaggtttatgctttcttgaaaacgtcagagaaaattcaaataaacatggtttacaacatctccagagcatccttctatctgaaatggttggagaaaagaatatcaacttagcaagtgttagacaaggaatttcaatgatacaacataggttacggcaaaagaaggttcttttgattgtagatgatgttgataagcacgagcagttacaggctattgttggagaacctaattggtttggtcccggcagcagagtcatcatcactactcgagacaaacaactgctggcatgtcaccaggttaaaacaaactatgaagttgaaaagttgaataagagcgatgctctacaactgctcagttggaaagcttttaaaactgacaaagttgatacaagttatgtaaatgtcatgaatcgtgtagtaacttatgcttctggccttccattggctttggaagtaataggttccaacttattcggaaaaactgtaggagaatgggaatctgctataaatcaatatgaaaaaattcctaataatcaaatctttaagatacttaaaaaaagttttgatgctttagaagaacaagagaagagcgtttttcttgacattgcttgttgcttcaaaggatttcgattgaaagaggtcgaagatatactttgtgctcactatggggattgcatgaaatatcatattagggtgttggttgaaaaatctctcataaaacagaactggtatggtgcagttacattgcatgacttgatagaagacatgggtaaagaaattgtccgacagaaatcaccaaaagagccagggaagcgcagtagattatgGTCTCCGGATGATATAATTCAAGTTTTGGAAGATGACTCGGGTACTGGTAAAATTGAAATCATATGTTTGGATTTCTCCCTACTTGACAAAGAAGAAATAGTAGAATGGAATCGAAAGGCTTTCAAGAAGATGAAAAATCTCAAAACACTTATTATTAAAAATGGTCATTTTTCCAAAGGTCCCAAACATCTTCCGAATAGTTTAAGAGTACTGGAATGGTTGAAATATCCTTCAAAAGGGTTACCAACTGATTTTTGTTCAAAGAAACTCTCCATATGCAAGTTACCTAAAAGCTGTTTTGGGTCACTGGAGTTGGCTGACTTATCAAAGAAGTTCACGAATATGACTGTTTTGAATTTTGAGGAATGCCAAGGATTAACACAAATACCAGATGTATCTGGGCTGCCAAATTTAGAAAATATTTCATTCCGAAATAGTGACAATTTAGCTACAATCCATGACTCCATTGGGTTCCTTGGTAAGCTTAAAATTTTGAATGCTTTTGGTTGCAAGAAACTTAGGAGTTTTCCACCGCTCAAGTTGGAATCTCTTGAAAAACTTGAACTTTCATATTGTTCCAGTCTAGAGAGTTTCCCAGAAATATTAGGAAAAATGGAAAACATAACAGAACTTGTGTTGGAGGCTTCTGCCATAAAGAATTTTCCAGTTTCATTTCAAAATCTCACTGGGCTTCAAGAATTACTGTTGCGTCACTGTGGAGTGTTAACGTTACCAAGTAGCATTGTCATGATGCCAAAATTGGTTCAGATCATTGCTTGGGAATGGAAAGGGTGGCTATTCCCAAAACAGGTTGAGGGTGAAGAAAAAGTTCGTTCAATGATGTCTTCAAACGTAAATTGTCTTCGTCTCTCAGGCTGTAACCTGTCCGATGATTTTTTTTCAATAGGTCTTTCATGGTTTGCTAATGTAAAAGAATTAGACCTATCAAGAAATAATTTCAAAGTTCTTCCTGAATGCATCAGTGATTGTCAATTCCTACTGGAGCTTAACTTAGATTATTGTTATTGTCTTCAAGAAATTAGAGGGATTCCGCCAAGCATAGAACTTTTCTCTGCAAGAGAATGTAAATCCTTGACCTCTTCTGGTAGAAGCACATTAGTGAATCAGAAGCTGCATGAGGTTGGAAACACCTTGTTTAGGTTTTCAGGAGCAAGGTTTCCAGAGTGGTTCGACCACCAAAGCCGGGGATCATCTAATTCTTTTTGGTTTCGCCACAAGTTCCCTGCCATTTGTCTTTGTATTGCTATTGGACCAACTCATTACGAATATTTTAAAATTGTTGGACCTACCTTGACCATCAATGGCATTGAATGTTTACCTGACGATGAGGATTTTGACTATTTTTGGATGGAGCCTGATCACACACATCTTTTCGATCTGCAAAAGATGCATCTCAGAGATAATCTAGACAAATATGTTGTAGAAAATGAATGGAACCATGTGGAGATTACTTACCATCCGACAATCGGGGAAAGACAGAAGGTTGTGGAGATCCCAGTCTTTACTGAAACTGGTATCTATGTGTACAAACAGAGGAGTAGCATGGTGGATATTCAATTTACTGATCCTTATAAAAGGAGAAGATTGGATGATGACTCAGGATCATAA 3201 0.1931 MAVASSSLIYDYEYDVFLSFRGEDTRYGFTGNLYNALRDNGIHTFIDDDQLQKGDEITSALEKAIEHSRIFIIVLSLNYASSSFCLNELTYILHCTKRKSLLVLPLFYNIDPSDLRHHRGSFGEALTNHENNFKAKKEGLEHNMDKLHKWKMALHQAASLSGYHFKQGDGYEYEFIKKIVKLVSSKINRAPLHVADYTVGLESRVLEVKLLLNVGSDDCVHMVGIHGIGGIGKTTLAVEVYNSIADHFEGLCFLENVRENSNKHGLQHLQSILLSEMVGEKNINLASVRQGISMIQHRLRQKKVLLIVDDVDKHEQLQAIVGEPNWFGPGSRVIITTRDKQLLACHQVKTNYEVEKLNKSDALQLLSWKAFKTDKVDTSYVNVMNRVVTYASGLPLALEVIGSNLFGKTVGEWESAINQYEKIPNNQIFKILKKSFDALEEQEKSVFLDIACCFKGFRLKEVEDILCAHYGDCMKYHIRVLVEKSLIKQNWYGAVTLHDLIEDMGKEIVRQKSPKEPGKRSRLWSPDDIIQVLEDDSGTGKIEIICLDFSLLDKEEIVEWNRKAFKKMKNLKTLIIKNGHFSKGPKHLPNSLRVLEWLKYPSKGLPTDFCSKKLSICKLPKSCFGSLELADLSKKFTNMTVLNFEECQGLTQIPDVSGLPNLENISFRNSDNLATIHDSIGFLGKLKILNAFGCKKLRSFPPLKLESLEKLELSYCSSLESFPEILGKMENITELVLEASAIKNFPVSFQNLTGLQELLLRHCGVLTLPSSIVMMPKLVQIIAWEWKGWLFPKQVEGEEKVRSMMSSNVNCLRLSGCNLSDDFFSIGLSWFANVKELDLSRNNFKVLPECISDCQFLLELNLDYCYCLQEIRGIPPSIELFSARECKSLTSSGRSTLVNQKLHEVGNTLFRFSGARFPEWFDHQSRGSSNSFWFRHKFPAICLCIAIGPTHYEYFKIVGPTLTINGIECLPDDEDFDYFWMEPDHTHLFDLQKMHLRDNLDKYVVENEWNHVEITYHPTIGERQKVVEIPVFTETGIYVYKQRSSMVDIQFTDPYKRRRLDDDSGS 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00245 1066 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 924 IPR044974 GO:0006952
Cca08g00245 1066 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 163 IPR035897 -
Cca08g00245 1066 Pfam TIR domain 14 189 IPR000157 GO:0007165
Cca08g00245 1066 SUPERFAMILY L domain-like 550 899 - -
Cca08g00245 1066 SMART till_3 13 160 IPR000157 GO:0007165
Cca08g00245 1066 Gene3D - 10 183 IPR035897 -
Cca08g00245 1066 Gene3D Ribonuclease Inhibitor 542 906 IPR032675 -
Cca08g00245 1066 ProSiteProfiles TIR domain profile. 12 187 IPR000157 GO:0007165
Cca08g00245 1066 Gene3D - 356 440 IPR042197 -
Cca08g00245 1066 SUPERFAMILY "Winged helix" DNA-binding domain 427 534 IPR036390 -
Cca08g00245 1066 Pfam NB-ARC domain 220 438 IPR002182 GO:0043531
Cca08g00245 1066 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 16 924 - -
Cca08g00245 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 450 IPR027417 -
Cca08g00245 1066 Gene3D - 184 352 IPR027417 -
Cca08g00245 1066 PRINTS Disease resistance protein signature 222 237 - -
Cca08g00245 1066 PRINTS Disease resistance protein signature 298 312 - -
Cca08g00245 1066 PRINTS Disease resistance protein signature 391 405 - -
Cca08g00245 1066 PRINTS Disease resistance protein signature 703 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00245 Cca-Chr8 3431776 3450137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00245 13 860 WRKY Transcription Factor Family AT4G12020 29.841 2.86e-78 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00245 - - gmx:100780257 1378.62