Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00244 ATGACTGCAAAAAGGTTTTTCAATGATTCTAATCAAGACCCTGATCAGCCAAGCGACAAACGGATGAGAAATACTAGAACCTCTTTTGCTTCAGTCATAGGAGAAGTGGTCATGGTAAAAAACTTGGAGAACCTTTTCTCAGTGTTGGAACCTTTGCTCAAAAGAGTGGTGAGTGAAGAAGTGGAACGAGTTGTGAGACAATGGTCACTCTCATTTACTAGGTCTCCCTCATTGATGCTCCAAAGAAATGAGCAACCGTCAAGCTTGCAACTATGGTTCAGCAAAAGGCTTTCCCTCCCAATTTTCACAGGAACAAGGATTCTTGACATTGAAGGGAACCCCATCAACATAGTTCTGATGGACAAGAGTGGGGGCCAAGTGGTCCCCACGAGTCTTCCACATGCCATCAAGCTAGAGATTGTGGTTCTTGATGGGGACTTTCCAGCTTGTGATGAGAATGAGGAATATTGGACGAGTGAGGAATTCAGCAGGCACGTGGTGAAGGAGAGAAGTGGGAAGAGACCCTTGCTTGCAGGAGAGCTGAACTTGACCATGAGGGATGGGATTGCACCAACAGTGGACATCGAGTTCACAGATAACTCAAGCTGGATTCGAAGCAGGAAGTTCAGAGTTGCAGTGAGGGTGGCACCAGGGAGCAATCAAGGTGTTTGGATTCGTGAAGGCATGACTGAAGCATTTATGGTTAAGGATCATCGTGGAGAATTGTACAAAAAACACCACCCTCCAATGCTCCATGACGATGTGTGGCGTCTAGAGAAGATTGGTAAAGAGGGAGCTTTCCACAGAAAATTGTCAAAAGCGGGGATCAATACAGTCCAAGACTTTCTCAAACTAGCAGTTGTTAACACTCCTAAGCTAAGAAATATATTAGGCATGGGGATGTCAGATAAAATGTGGGAAGTCACTATCAAGCATGCAATGACTTGTGACATGGGGAGCAAGATGTACATTTACCGTGGATCACAATTTACTATTTTTCTGGATCCAGTATGCAAATTACTTAGAGCAGATATCAATGGACAGACATTTTTCAATAGAGATCCAATGAGTCATATGAATAAGACCTATATAGACAAATTGGTGAGAGAAGCATATGCTAGATGGCATAACTTGGAGGAAATTGATGGAGTTCTGAATGATAACATTGCTTTGCTAACCCAAGGTGAGCAAACTGTGGAGCAATTTCCAAACAATCAACCTGCAGCATCTGTTGTCACATATGATCAAGATCAATATTACAGTGACAAATCTGGCAGCTATGTAGCAAACGATACTGCACAAATGGGATCCTGTGAGTGGTCAATGAATCAAGTCTATAGCACAGCACCATTGGCTATTGCTACTACCTTTCCCTTTATCAGTTTCTCAGGGTCACAATCAGATGGCGACATAACCGCTTCAGGTTCTGGATCAGTGGACGTTGATGGGGCCACACTGCAGAATTAA 1467 0.4349 MTAKRFFNDSNQDPDQPSDKRMRNTRTSFASVIGEVVMVKNLENLFSVLEPLLKRVVSEEVERVVRQWSLSFTRSPSLMLQRNEQPSSLQLWFSKRLSLPIFTGTRILDIEGNPINIVLMDKSGGQVVPTSLPHAIKLEIVVLDGDFPACDENEEYWTSEEFSRHVVKERSGKRPLLAGELNLTMRDGIAPTVDIEFTDNSSWIRSRKFRVAVRVAPGSNQGVWIREGMTEAFMVKDHRGELYKKHHPPMLHDDVWRLEKIGKEGAFHRKLSKAGINTVQDFLKLAVVNTPKLRNILGMGMSDKMWEVTIKHAMTCDMGSKMYIYRGSQFTIFLDPVCKLLRADINGQTFFNRDPMSHMNKTYIDKLVREAYARWHNLEEIDGVLNDNIALLTQGEQTVEQFPNNQPAASVVTYDQDQYYSDKSGSYVANDTAQMGSCEWSMNQVYSTAPLAIATTFPFISFSGSQSDGDITASGSGSVDVDGATLQN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00244 488 Pfam Calmodulin binding protein central domain 250 316 IPR046830 -
Cca08g00244 488 Pfam Calmodulin binding protein C-terminal domain 321 381 IPR046829 -
Cca08g00244 488 MobiDBLite consensus disorder prediction 1 22 - -
Cca08g00244 488 Pfam Calmodulin binding protein-like N-terminal domain 89 238 IPR046831 -
Cca08g00244 488 PANTHER PROTEIN, PUTATIVE-RELATED 1 479 - -
Cca08g00244 488 PANTHER OS02G0177800 PROTEIN 1 479 IPR012416 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00244 Cca-Chr8 3418370 3423873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00244 3 383 Calmodulin-binding Proteins AT5G57580 49.354 4.69e-117 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00244 - - gmx:100803213 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00244 08 3418370 3423873 Cca08g00244 08 3418370 3423873 ECH