Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00242 ATGGCTAAGGAAGAGGAGCAGGTATTTCCACTGCTTCTTGAGAAGTTCTCTCTTGAGGAACAGGCATCTTTAGTTTGGCAGTTTCTCTGCAGTATCCCTGTGAATATGATGACAGAATTTCTTCCATGGCTTTCAACATCTGTATCACCTGATGAATCTCAGGATTTGCGGAAGTGCTTATGCAAGATAGTGCCAGAGGAAAAACTTCTTCAAAAGGTTATTTTCACCTGGATGGAAGGGAGAAGTTGTGCTAACACAATTGAAAATTGTGTAGATCATTCTCAGATGCGATGTAGTCCTAATCTTTTAACCCATCAGAATGGTAAAATAAAATGTGCATGTGAGCCCTCAGCAACTGGGAAAAGGAAATATTCTGAGTCTATTTTAGATGTTTCTGATACCATGAGAACACATCCTATAGATGAAATATTGCTTTGGCATAATGCAATAAAAAAAGAGTTAAATGACATAGCAGCACAAACCAGAAAGATACAACTCTCTGGAGATTTTACTAACCTGTCAGCTTTCAATGAAAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCACAGTAATGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGGAAATTTTCTTTCTCTGAAGAACATATTGAAGAAGAAAGCCAATTTAATGACTTCCGGTCTTTGATTGAAAGTATTCAAAGTGAAGGAGCAACATCTAGTTCAGAAACTGAATTTTATTCAACATTGTGTTCACATGCTGATCATATATTAGAAACAATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCTCTTGCACGGAAGCACTTTACCTTCAAAAGGCAACGTGAACTTCTCTATCAAAGCTTATGCATGATGCCTTTGAAATTGATTGAGCGTGTCCTGCCATGGTTGATTCGATCATTAACTGAAGATGAAGCACAGATGTTTTTGAAAAACATGCAATTGGCAGCTCCAGCAATAGATTCTGCTTTAGTCACACTTTTCTGTGGCTGGGCTTGCAAGGCTCGTAAAGATGGTCTGTGTTTGTCTTCAAGTGTGTCAGGTTGCTGTCCTGCCCAGAGATTTACTGATATTGAAGAAAATATTGTTCAATCTTCCCGTACTTCTGCTTCTGCATTGTCTGGAAGAGATTGCTCAGTATTAGTTGAATCAGATAAGACCCAACAAAGATCAGTCAAGCAAAACATAATGGAGGTGCACAGGAATGAAGATGTCTCTAAAACATCAGAAAATGAAAGTATTCAAAAACAGTGTTGTAGTGCTCGGTCTTGTTGTGTGCCAGCTTTAGGAGTCAGTGGAAACAATTTGGGACTGGGTTCACTCTCTACAACCAAGTCCTTTCGCTCTTTGTCTTCAACAGCTTCTGCCCCATCCCTTAATTCAAGTCTTTTCATATGGGAAACAGACAACAGCTCATGTGATGTTGGTTCTACAGAAAGACCAATTGATACTATATTTAAATTCCACAAAGCCATACGCAAAGACTTGGAGTATTTAGACATTGAATCTGGAAAGCTTTGTGATGGTGATGAAACAATCATTCGACAATTTAGTGGAAGATTCCAGCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCCGAGGATGATATAGTATTTCCTGCTCTTGAATCCAAAGAGGCACTTCATAATGTGAGCCATTCTTACACGCTGGACCATAAGCAGGAAGAAAAATTATTTGAAGATATTTCTTGTGTTCTTTCTGAGCTTTCTGTCCTTCATGGAGACTTGCAGAGGACCCATATGTCAGCTGATTTAAGTGAAAGTAATTTTGGAATTTCTGATGCCAATGATAGTGATGATATCAAAAAGTACAATGAGCTTGCAACTAAGCTTCAAGGGATGTGCAAATCTATTAGAGTGACCCTGGATCAACATATTTTCAGGGAAGAGCTCGAACTCTGGCCATTGTTTGGAAAACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGTAGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACCTCTGCACTTACGCAGGATGAACAGAACAAAATGATGGACACATGGAAACAGGCAACTAAAAACACCATGTTCAATGAATGGCTAAATGAATGTTTGAAAGAAACTCCTGTATCTACATCACAGACAGAAGCATCAGAGCGTAGCAGTTCTCAAAGAGGAGGTGATTATCAAGAAAGCTTGAACCTGAATGATCAGATGTTCAAGCCAGGCTGGAAAGACATATTCCGTATGAATCAGAATGAACTTGAGTCAGAAATCCGGAAGGTTTATCGTGACTCAACTCTTGATCCTAGGAGAAAGGCGTACCTTGTGCAGAATCTAATGACAAGTCGCTGGATAGCTGCCCAACAGAAGTTACCTAAGGCTCCATCAGGGGAATCATCTAGTAAACAAATAGAAGGATGCTCACCATCATTTCGGGACTCAGAGAAACAAATATTTGGTTGTGAGCACTATAAGCGAAATTGCAAGCTTCGAGCTGCTTGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGCGAGTGATCACTCGATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCAGTGCCTAACTGTACAGCCAGTTGGGCCTATATGCATGTCACCTTCATGTAATGGACTTACAATGGCAAAGTATTATTGCAACATTTGCAAATTTTTTGATGATGAAAGGAATGTTTATCATTGCCCATTTTGCAATATATGCCGTGTTGGACAAGGGCTCGGGATTGATTATTTTCATTGCATGAAATGCAATTGTTGCCTGGGGATAAAATCAACTTCTCACAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGCGATGACTTGTTCACGTCAAGTGCAACAGTGAGAGCTTTACCTTGTGGGCATTACATGCATTCATCTTGTTTTCAGGTACGTCATGCCCATTTTAGGGTTTAG 3003 0.3949 MAKEEEQVFPLLLEKFSLEEQASLVWQFLCSIPVNMMTEFLPWLSTSVSPDESQDLRKCLCKIVPEEKLLQKVIFTWMEGRSCANTIENCVDHSQMRCSPNLLTHQNGKIKCACEPSATGKRKYSESILDVSDTMRTHPIDEILLWHNAIKKELNDIAAQTRKIQLSGDFTNLSAFNERLQFIAEVCIFHSNAEDKVIFPAVDGKFSFSEEHIEEESQFNDFRSLIESIQSEGATSSSETEFYSTLCSHADHILETIQRHFHNEEVQVLPLARKHFTFKRQRELLYQSLCMMPLKLIERVLPWLIRSLTEDEAQMFLKNMQLAAPAIDSALVTLFCGWACKARKDGLCLSSSVSGCCPAQRFTDIEENIVQSSRTSASALSGRDCSVLVESDKTQQRSVKQNIMEVHRNEDVSKTSENESIQKQCCSARSCCVPALGVSGNNLGLGSLSTTKSFRSLSSTASAPSLNSSLFIWETDNSSCDVGSTERPIDTIFKFHKAIRKDLEYLDIESGKLCDGDETIIRQFSGRFQLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSELSVLHGDLQRTHMSADLSESNFGISDANDSDDIKKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECLKETPVSTSQTEASERSSSQRGGDYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKAPSGESSSKQIEGCSPSFRDSEKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDNASDHSMDRKATLEMMCMQCLTVQPVGPICMSPSCNGLTMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCLGIKSTSHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQVRHAHFRV 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00242 1000 PANTHER CHY ZINC FINGER PROTEIN 1 994 - -
Cca08g00242 1000 MobiDBLite consensus disorder prediction 720 744 - -
Cca08g00242 1000 ProSiteProfiles Zinc finger CTCHY-type profile. 899 962 IPR017921 -
Cca08g00242 1000 Gene3D nmb1532 protein domain like 140 288 - -
Cca08g00242 1000 Gene3D nmb1532 protein domain like 484 727 - -
Cca08g00242 1000 SUPERFAMILY Zinc hairpin stack 900 956 IPR037275 -
Cca08g00242 1000 Pfam Hemerythrin HHE cation binding domain 138 272 IPR012312 -
Cca08g00242 1000 Pfam Hemerythrin HHE cation binding domain 488 651 IPR012312 -
Cca08g00242 1000 Pfam CHY zinc finger 834 909 IPR008913 GO:0008270
Cca08g00242 1000 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 994 - -
Cca08g00242 1000 CDD Hr-like 490 650 - -
Cca08g00242 1000 CDD Hr-like 141 270 - -
Cca08g00242 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 958 994 IPR013083 -
Cca08g00242 1000 SUPERFAMILY CHY zinc finger-like 828 891 IPR037274 GO:0008270
Cca08g00242 1000 ProSiteProfiles Zinc finger CHY-type profile. 827 896 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00242 Cca-Chr8 3356101 3366029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00242 1 993 C2H2 Transcription Factor Family AT3G18290 66.102 0.0 1345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00242 K16276 - gmx:100791354 1892.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00242 08 3356101 3366029 Cca09g02713 09 52799445 52810524 ECH
Cca08g00242 08 3356101 3366029 Cca08g00242 08 3356101 3366029 ECH
Cca09g02713 09 52799445 52810524 Cca08g00242 08 3356101 3366029 PCT