Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00239 ATGAGGTTTCTGGCCAGGTTGTGCCCCTGCTACTACAAGGCCGGCGCAGCCTCCGACCACGGCGCCGACCACCACGACGATCCCAACTGCCCCGACGACTCCTTCGACCTCATATTCGACCTCCACACTCTCCAACTTGCCACCAATTTCTTCTCCGACCTCAACCAGCTAGGTCATGGAGGCTTTGGTCCTGTCTTCAAGGGATTGATGCCAAATGGTCAAGAAGTGGCGGTTAAGAAGCTGTCATTGCAATCAAGGCAAGGAATTAAAGAGTTCACCAATGAAGTCAAGCTATTACTCAAAATTCAACACAAGAACTTGGTTATATTACTGGGTTGTTGTGCAGAAGGGCCTGAAAAGATGCTTGTTTATGAGTATCTGTCTAACAAAAGCCTTGATCACTTTCTGTTTGATAAGAGAAGGTCTCCAATTTTGGACTGGGCAACACGATTTAGAATAGTTACAGGTGTGGCAAGAGGACTTCTCTACCTGCATGAAGAAGCCCCGGAAAGAATTATTCATAGGGACATTAAAGCTAGTAACATATTGCTGGATGACAAACTAAATCCAAAAATTTCAGACTTTGGCTTGGCAAGATTGTTTCCTGGGGAGGACACTCATGTGCAGACATTCAGGATTTCCGGTACACATGGTTACATGGCTCCTGAATATGCTTTGCGTGGATATCTATCTGTGAAGACAGATGTTTTCAGTTATGGAGTCCTGGTGTTGGAAATAGTTAGTGGAAGAAAAAACCATGTCTTGCACCTTGGTTCAGAAAAGGCAGATCTCTTGAGCTATGCATGGTCGCTATATCAAGGGGGTAAGATAATGGACTTAATTGACCCAACCCTTGGTAAATACAATGGTGATGAGGCAGCAATGTGCATTCAGCTAGGTTTGTTGTGTTGCCAAGCAAGCATAATTGAAAGACCTGACATGAATGCTGTTCATCTTATGCTCTCAAGTGATTCCTTCACTTTGCCAAGACCAGGTAAACCAGGAATTCAAGGTCGTGTTGGACGTTGGACTACAACCACAACTTCTGCTTTGACCAATACCAATGCTAGTAGTGCTACCAGGGCCTCAGGTGGTAGTAGTAGTTTTGTAGAGGATTATTCTAGAAATTCTATATCTACCTCTTCTTTTGATGAAGGCAGATGA 1164 0.4433 MRFLARLCPCYYKAGAASDHGADHHDDPNCPDDSFDLIFDLHTLQLATNFFSDLNQLGHGGFGPVFKGLMPNGQEVAVKKLSLQSRQGIKEFTNEVKLLLKIQHKNLVILLGCCAEGPEKMLVYEYLSNKSLDHFLFDKRRSPILDWATRFRIVTGVARGLLYLHEEAPERIIHRDIKASNILLDDKLNPKISDFGLARLFPGEDTHVQTFRISGTHGYMAPEYALRGYLSVKTDVFSYGVLVLEIVSGRKNHVLHLGSEKADLLSYAWSLYQGGKIMDLIDPTLGKYNGDEAAMCIQLGLLCCQASIIERPDMNAVHLMLSSDSFTLPRPGKPGIQGRVGRWTTTTTSALTNTNASSATRASGGSSSFVEDYSRNSISTSSFDEGR 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00239 387 MobiDBLite consensus disorder prediction 354 387 - -
Cca08g00239 387 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 385 - -
Cca08g00239 387 Gene3D Transferase(Phosphotransferase) domain 1 127 327 - -
Cca08g00239 387 CDD STKc_IRAK 57 321 - -
Cca08g00239 387 ProSiteProfiles Protein kinase domain profile. 51 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00239 387 Gene3D Phosphorylase Kinase; domain 1 24 126 - -
Cca08g00239 387 SUPERFAMILY Protein kinase-like (PK-like) 35 321 IPR011009 -
Cca08g00239 387 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 385 - -
Cca08g00239 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Cca08g00239 387 Pfam Protein tyrosine and serine/threonine kinase 55 253 IPR001245 GO:0004672|GO:0006468
Cca08g00239 387 SMART serkin_6 51 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00239 Cca-Chr8 3310443 3315062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00239 37 370 Receptor kinase-like Gene Family AT4G21410 51.479 2.73e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca08g00239 PK_Tyr_Ser-Thr 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00239 - - aprc:113868075 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00239 08 3310443 3315062 Cca08g00239 08 3310443 3315062 ECH