Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00238 ATGTACACATCAAGGAAGAAAATCCACAAAGACAAGGATGTTGAGCCAACTGAATTTGAGGAATCAGTTGGACAGGCATTGTTTGATCTAGAAAATACCAACAATGAGCTGAAAAGTGATTTGAAAGATTTATACATAAATTCAGCAGTCCAAATTGATGTTGCTGGGAACCGCAAGGCTGTGGTTATCCATTTTTCCTACAGATTAAGGAAAGGATTTCGGAAGATTCATGTCAGGCTTGTGAGAGAACTAGAGAAAAAATTTAGTGGAAAGGATGTAGTCCTGATTGCCACCCGTAGGATATTAAGGCCACCAAAGAAAGGTTCTGCCGTTCAGCGTCCCCGCAGTCGGACACTCACTGCTGTGCATGAGGCAATGCTCGAGGATATTGTATTGCCTGCTGAGATTGTTGGAAAGCGTGTTAGATATAGAATTGATGGTGCCAAGATTATGAAGGTCTTTTTGGACCCCAAGGAGCGAAACAACACCGAGTACAAGTTGGAGACTTTTGCTGCAGTATACAGGAAATTTTCTGGCAAAGATGTTGTGTTTGAGTATCCTACTACCGAGGCATAG 576 0.4219 MYTSRKKIHKDKDVEPTEFEESVGQALFDLENTNNELKSDLKDLYINSAVQIDVAGNRKAVVIHFSYRLRKGFRKIHVRLVRELEKKFSGKDVVLIATRRILRPPKKGSAVQRPRSRTLTAVHEAMLEDIVLPAEIVGKRVRYRIDGAKIMKVFLDPKERNNTEYKLETFAAVYRKFSGKDVVFEYPTTEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00238 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 - -
Cca08g00238 191 Coils Coil 27 47 - -
Cca08g00238 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Cca08g00238 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 IPR000554 GO:0003735|GO:0005840|GO:0006412
Cca08g00238 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00238 Cca-Chr8 3302280 3304870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00238 1 191 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 77.487 5.18e-111 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00238 K02993 - gmx:100499757 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00238 08 3302280 3304870 Cca08g00238 08 3302280 3304870 ECH