Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00237 ATGAGACTAGACATGTCTACTTCTCCAAAGAGCATCATCTATTCATGTGAAGATGATAATGAACTTAGAAGAGGGCCATGGAGTGTTGAAGAGGATGATCTTCTCATTAATTACATTGCCAATCACGGGGAGGGGAGATGGAATTTGCTTGCTATATATTCAGGATTAAGGAGATCAGGAAAGAGTTGCAGATTAAGGTGGCTAAATTATCTAAAGCCAGATGTTAAGAGAGGAAATTTAACCAAAGAAGAGCAGCTTTTGATTTTTGAACTCCACTCAAAGTGGGGCAACAGGTGGTCAAAAATTGCACAACAGCTGCCTGGCAGAACAGATAACGAAATCAAGAACTATTGGAGAACAAGGATTCAAAAACAATCAAGATATATGAAATTTGACACAGATAGAACAGAATTTGTAGAATTTGTCAAGGGTCTAAAGATGACAAGATATCTTCATAAAGCACAAGAATCATCTTCTTCAGCCATGTCAATCCAAGACCAAGCAATACCCTTGCCTTTTGAGGGTGGTTGTCACTATTCCTCATTTGAGATTGGAACAACACCAACAACACAAATCACTTGCCAGGGAACTTGTGTGAATGAAGGAGGCCCCAATTGTTTGTACTCAGACTCTGAACACAACAATGGTTCAAGCATTTCCTCTTCAGAATCAGTGAATATCCTAAATATGGATCAGCCTTTGGAATACACTACTAGTCAATTTCAGGCCTTGGATAGTTCTGACTTTGGCATCTTTTCACATGATGGTTATTGCATAAATAACAATAATGAATATGGCATGGATGCCTTCGACTTGACAACCACAACCACAATGGTTGCTGAGGATCTGAAACTCCCAATGATTGATTGCCGAATATCACAAACCAGTTGGCCAAACAAGGAATTTGCACGTAGCGCATGGAGCATGGATGAATTATGGCACTTTAGGAACACACAAAGATGA 963 0.3946 MRLDMSTSPKSIIYSCEDDNELRRGPWSVEEDDLLINYIANHGEGRWNLLAIYSGLRRSGKSCRLRWLNYLKPDVKRGNLTKEEQLLIFELHSKWGNRWSKIAQQLPGRTDNEIKNYWRTRIQKQSRYMKFDTDRTEFVEFVKGLKMTRYLHKAQESSSSAMSIQDQAIPLPFEGGCHYSSFEIGTTPTTQITCQGTCVNEGGPNCLYSDSEHNNGSSISSSESVNILNMDQPLEYTTSQFQALDSSDFGIFSHDGYCINNNNEYGMDAFDLTTTTTMVAEDLKLPMIDCRISQTSWPNKEFARSAWSMDELWHFRNTQR 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00237 320 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Cca08g00237 320 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Cca08g00237 320 Gene3D - 80 123 - -
Cca08g00237 320 SMART sant 76 124 IPR001005 -
Cca08g00237 320 SMART sant 23 73 IPR001005 -
Cca08g00237 320 Gene3D - 21 77 - -
Cca08g00237 320 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 7 315 - -
Cca08g00237 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Cca08g00237 320 CDD SANT 81 120 IPR001005 -
Cca08g00237 320 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Cca08g00237 320 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Cca08g00237 320 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
Cca08g00237 320 CDD SANT 26 71 IPR001005 -
Cca08g00237 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 71 IPR017930 -
Cca08g00237 320 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 7 315 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00237 Cca-Chr8 3299788 3301370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00237 19 163 MYB Transcription Factor Family AT1G68320 63.448 1.81e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca08g00237 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00237 K09422 - gmx:100778425 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00237 08 3299788 3301370 Cca09g02709 09 52766161 52771852 ECH
Cca08g00237 08 3299788 3301370 Cca08g00237 08 3299788 3301370 ECH