Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00228 ATGGAGGAAAATCTGCCTCCTGGTTTTAGGTTCCATCCTACAGACGAAGAGCTCATCACATGCTATCTTACAAGGAAGGTTTCTGATTCCAGCTTCACATCCAAAGCTATAGCAGTTGTTGATTTCAATAAGTCTGAACCTTGGGACCTCCCAGGCAAGGCCTCGATGGGGGAGAAAGAGTGGTACTTCTTCAGCTTAAGAGATCGAAAGTATCCAACCGGACTTCGAACAAACCGAGCCACTGAATCAGGGTACTGGAAAACCACAGGGAAAGACAAGGAAATTTTTCGTGCTGGGGTTTTGGTAGGAATGAAGAAAACCCTAGTCTTTTACAGGGGTAGAGCTCCAAGGGGTGAGAAAAGCAATTGGGTCATGCATGAATATAGACTAGAAAACAAGCACCACTTTAGACCATCCAAGGATGAATGGGTGGTTTGCAGGGTTTTCCAAAAGAGCTTACAAGTGAAAAAACCACAACAAATTACACCCTCCTCCCAACCAGAGTCCCCATGTGACACAACCTCAATGGTCAATGAATTTGGTGATGTTGAGTTTACCAATCTAAATAACATTGCAAATTCATCATGTGGACTCAACAACATTTCAGAACAAACTTTCAATGCTGATATCAGCAATAATAGTGTTAACAGAAACATGAACTTGACCATGAATTGGCCAGTTGCAAGCGAGGTTCCCTCTCTTCCATCTCTCACATGGCCCTCAGGGTTGATAAATCCAAGTATTTCTGTGAATTCTTTGCTTCTCAAGGCACTGCAACTTAGGAGTTATCAACAAAGAGAAGCTGTAGCAGCGGTAGCCACAAATCATTTTGCATCAGCAGCATCATATATGCCTCATGGAGGTTCCCATGTTGGAACTGATCTAACTTCAAATTTCACTGCCTCTTCTTCTAGAGTTTTAGAATGTATGCCACAGCAGCAACAACAGGAGCAACCATTCCATTTGGACTCCATTTGGTGA 981 0.4302 MEENLPPGFRFHPTDEELITCYLTRKVSDSSFTSKAIAVVDFNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRAGVLVGMKKTLVFYRGRAPRGEKSNWVMHEYRLENKHHFRPSKDEWVVCRVFQKSLQVKKPQQITPSSQPESPCDTTSMVNEFGDVEFTNLNNIANSSCGLNNISEQTFNADISNNSVNRNMNLTMNWPVASEVPSLPSLTWPSGLINPSISVNSLLLKALQLRSYQQREAVAAVATNHFASAASYMPHGGSHVGTDLTSNFTASSSRVLECMPQQQQQEQPFHLDSIW 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00228 326 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Cca08g00228 326 PANTHER BNACNNG63190D PROTEIN 2 263 - -
Cca08g00228 326 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 263 - -
Cca08g00228 326 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Cca08g00228 326 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
Cca08g00228 326 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00228 Cca-Chr8 3191595 3194116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00228 1 326 NAC Transcription Factor Family AT3G18400 55.588 1.89e-111 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca08g00228 NAM 6.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00228 - - gmx:100787111 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00228 08 3191595 3194116 Cca08g00228 08 3191595 3194116 ECH
Cca09g02703 09 52707777 52711693 Cca08g00228 08 3191595 3194116 PCT