Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00225 ATGAAGAAAACATATGAAGTACAATACTCACAGTTAGAAGCAAAAGTTGAGGAGGAAAGAAGTGCAAATGACCAAAAGATTACTAATTATGTTAACGAGCTAGAGGACAAAAAAATAGAAATTTCAACATTGAAGCAAGAGTTGGAAACCGAGAAAAAAACATATGAAGTACAATGCTCACAGTTGGAAACAAAAGTTGAGGATGCTAAAGGCGAATTGAAACAAAAATCACAAGAATATGAACATCTATTGGAAAAACTAAGGAATAAGGTTATAGAGAATGAGGCCATTTTTGAGTCAAAATATCATAAGTGGACCATGAAAGAGAACCAAATACGAAAATCTATGAATTTTCAATTTAGTTACCTACAGAATTTGAAATTGTCATGGGAATCCATTAAGCAAGATGTTATGAAAAAGCAAAACATTTATTCTGAGGAATGTAATCGATTAGGTGTAAATCTTAAACCATTAGTGGATGCAGCTGAGAATTATCAAATAGTTCTTGCGGAAAATAGAAAATTGTTCAATGAAATTCAAGAATTAAAAGGAAATATCAGAGTGTACTGTCGACTTAGACCATTTCTTCCTGGACAAAAGGAAAAACAATCAATTGTGGAACACATTGGTGAAAATGATTTGGTTGTGGCAAATCCTGCCAAAACAGGAAAAGATGCCCTTAAAACATTTAAGTTCAACAAGGTCTTTGGTCCAACCTCAACTCAAGGTGAAGTGTATTCTGATGTACAGGCCTTTATACGATCAGTACTAGATGGATTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACCTACACAATGAGTGGTCCAAATAATGCAACACCCGAGAGTGTTGGTGTTAACTATCGAGCTCTTAATGACCTCTTCAGCATATCCACAAGTAGAAAAAGCTCCATAGTATATGACATTGGGGTACAAATAATTGAGATATATAACGAACAAGTGCGCGATTTGTTATCAACTGATGCTTCTGCAAAGAAATTTGGGATATTGAATCACTCTCAACCAAATGGTTTAGCAGTACCTGATGCTACCATGTTGCCTGTAAAATCAACTTCAGATGTTATTAAGCTAATGGACATTGGCCTAAAAAATAGAGCCAAGGGTTCCACTGCTATGAATGAAAGAAGTAGTCGTTCTCATAGTGTGGTCTCAATTCATGTTCGTGGGGTGGATCAAAAATCTGGTTCCTCCCTTCATGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGATCGCTCAGAAGTAACTGGGGATAGACTTAAGGAAGCACAACATATTAACAAATCACTATCTGCCCTTGGAGATGTTATTTTTGCACTTTCTCAAAAGAGTTCTCATGTACCATACAGAAATAGCAAGCTTACTCAACTTTTGCAATCATCTCTTGGTGGTCAAGCAAAGACACTCATGTTAGTTCAAATTAATTCAGACATTAAGTCTTTTTCTGAGTCTTTGAGTACTTTGAAGTTTGCTGAGAGGGTTTCTGGCGTGGAGCTAGGAGCTGCTAAAAGTACCAAAGAGGGCAGAGATGTCAGGGAATTAATGGAGCAGGTGGCTTCTCTTAAGGACACTATTTTAGTTAAAGATGAGGAGATTGAGAAACTACAGTTACTTAAGGATCTAAAAAATGTTTATCCTGGTGCCAATTCTGAGAGGATTGAAGCTGCCTCGGAATAA 1722 0.3653 MKKTYEVQYSQLEAKVEEERSANDQKITNYVNELEDKKIEISTLKQELETEKKTYEVQCSQLETKVEDAKGELKQKSQEYEHLLEKLRNKVIENEAIFESKYHKWTMKENQIRKSMNFQFSYLQNLKLSWESIKQDVMKKQNIYSEECNRLGVNLKPLVDAAENYQIVLAENRKLFNEIQELKGNIRVYCRLRPFLPGQKEKQSIVEHIGENDLVVANPAKTGKDALKTFKFNKVFGPTSTQGEVYSDVQAFIRSVLDGFNVCIFAYGQTGSGKTYTMSGPNNATPESVGVNYRALNDLFSISTSRKSSIVYDIGVQIIEIYNEQVRDLLSTDASAKKFGILNHSQPNGLAVPDATMLPVKSTSDVIKLMDIGLKNRAKGSTAMNERSSRSHSVVSIHVRGVDQKSGSSLHGNLHLVDLAGSERVDRSEVTGDRLKEAQHINKSLSALGDVIFALSQKSSHVPYRNSKLTQLLQSSLGGQAKTLMLVQINSDIKSFSESLSTLKFAERVSGVELGAAKSTKEGRDVRELMEQVASLKDTILVKDEEIEKLQLLKDLKNVYPGANSERIEAASE 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00225 573 Coils Coil 2 93 - -
Cca08g00225 573 SMART kinesin_4 183 520 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca08g00225 573 PRINTS Kinesin heavy chain signature 259 280 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca08g00225 573 PRINTS Kinesin heavy chain signature 382 399 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca08g00225 573 PRINTS Kinesin heavy chain signature 413 431 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca08g00225 573 PRINTS Kinesin heavy chain signature 462 483 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca08g00225 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 550 IPR027417 -
Cca08g00225 573 ProSiteProfiles Kinesin motor domain profile. 185 512 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca08g00225 573 Pfam Kinesin motor domain 191 510 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca08g00225 573 Coils Coil 165 185 - -
Cca08g00225 573 Gene3D - 21 63 - -
Cca08g00225 573 Gene3D Kinesin motor domain 127 514 IPR036961 -
Cca08g00225 573 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 27 554 - -
Cca08g00225 573 PANTHER KINESIN-LIKE PROTEIN KLP-3 27 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00225 Cca-Chr8 3148657 3151950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00225 65 512 Calmodulin-binding Proteins AT5G65930 34.513 5.75e-71 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00225 K10406 - gmx:100779403 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00225 08 3148657 3151950 Cca08g00225 08 3148657 3151950 ECH
Cca09g02701 09 52681243 52689063 Cca08g00225 08 3148657 3151950 PCT