Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00222 ATGAGCAACGAAATGAAAGAAGCAAGTGCCTTAGGAGCAAGAACAGCACGAGCATGCGAGAGTTGCCTAAAAGTGAGAGCACGTTGGTATTGTGCAGCTGATGATGCTTTCCTTTGTCGTGGCTGTGACACCATGGTTCACTCAGCGAACCAATTAGCAAGCAGGCACGAAAGGGTTAAGCTTCAAACTGCATCTTCCAAGGTCAACTACTCAGTGACCCCCCACGACAGCAATAAGGTAGCATGGCATAGTGGATTCACACGCAAGGCAAGAACTCCACGTCACAAGCACTCATCAGTGcaacaacaactacaacatgaacaagaaGAGGTGTTTTTCAACAACACTATTAGTTCTCTTCCCCTTGTCCCAGAGCTTGGAAGTGAAGAACCACTTCTTAATGACGAGTCCGAGGAGCAACTTCTGTGTCGCGTGCCCGTGTTTGATGCTGAAGAAGCCTTTGACTTGGAGTTTCTCCCTTCAGACATGGACCTTGCTGACTTTGCTGCTGATGTTGAAAACTTACTAGGAAACGGGGCTGGTGAGGATTCATGTGAGCACATGAAAGGATCAGAACTACTACTTAAAGAAGAAGAAGGTGATGAAATGGATGCATGTGTTAATGGACTAATTGGGGCCAAAGATGCAATGGTGAAGGTTAAAGATGAAGAAGAACTTGATGGTGATGACACAGCTTGTCATATTCTTGACATGGATAGTGAGGCCTTTAATTGGAATATTAATGCTGAGTCAGAATCACATGCACAGGAACAGGAAGAGGAGGTGAGTAAAGTGGGAATTAACAATAAGAAGGACATATTTTTGAGGCTAAACTATGAAGAAGTGATTACTGCTTGGGCCAGTCAAGGTTCTCCTTGGACTACAGGAACCCCACCTAAGTTCAACTCTGATGATTGCTGGCCAGACGTTTTGGGTTCAAGTGGTGTGGATGTTCAATTCCGTTATGGGGAATTGAGAAGCTTGATGGGGCATAGAGATGGGGGAAGAGAAGCAAGAGTGTCAAGGTACCGAGAGAAGAGAAGAACACGTTTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTGAACGCGGAGAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGAGGACATCCTTTGTTGGAGCCACTGCTTTGCCACCACTGACATCAAAGTGA 1182 0.4416 MSNEMKEASALGARTARACESCLKVRARWYCAADDAFLCRGCDTMVHSANQLASRHERVKLQTASSKVNYSVTPHDSNKVAWHSGFTRKARTPRHKHSSVQQQLQHEQEEVFFNNTISSLPLVPELGSEEPLLNDESEEQLLCRVPVFDAEEAFDLEFLPSDMDLADFAADVENLLGNGAGEDSCEHMKGSELLLKEEEGDEMDACVNGLIGAKDAMVKVKDEEELDGDDTACHILDMDSEAFNWNINAESESHAQEQEEEVSKVGINNKKDIFLRLNYEEVITAWASQGSPWTTGTPPKFNSDDCWPDVLGSSGVDVQFRYGELRSLMGHRDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFVGATALPPLTSK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00222 393 Coils Coil 392 393 - -
Cca08g00222 393 Pfam CCT motif 336 378 IPR010402 GO:0005515
Cca08g00222 393 ProSiteProfiles CCT domain profile. 336 378 IPR010402 GO:0005515
Cca08g00222 393 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 384 - -
Cca08g00222 393 SMART bboxneu5 14 61 IPR000315 GO:0008270
Cca08g00222 393 Pfam B-box zinc finger 16 61 IPR000315 GO:0008270
Cca08g00222 393 CDD Bbox1_BBX-like 18 59 - -
Cca08g00222 393 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Cca08g00222 393 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00222 Cca-Chr8 3117930 3125981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00222 8 378 C2C2-CO-like Transcription Factor Family AT1G25440 43.301 1.11e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Cca08g00222 zf-B_box 8.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00222 - - gmx:100802113 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02700 09 52673586 52675543 Cca08g00222 08 3117930 3125981 PCT