Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00220 ATGAGCACACTGAGGAAAATTAGAGTTGTGTACACTGACCCTGATGCTACAGATTATTCAAGTGAAGAAGATACTAAGTTACTGAGCAACGGCTATCAGTTAAATTCTAAGAGGGTTGTCAAGGAAATTTTGTTTCCATGCATGCCAAGCAAATTACATGTAGAGAATTCTTCTCAAGAAGATGTCAATAGTGAAAAGAACAATGTAAGTTCTGGTCCTTTTGCAAGTAGGAGGAGCAGGAAATCATCAAGCATGTACAAAGGTGTTCAACGCAGGAAATGGGGAAAATATGTGGCAGAAATTAGAGATCCTATCCGTGGGGTCAGAATGTGGCTTGGTACTTTTGACTCTGAAGAAGAGGCTGCTATGGCTTATGAGAGAAAGAAAAATGAGTTTGAAAGTTCTTTGTTGGCTTTGAGCAAAAGGGGTGCATTGGCTTCTTCTGAAAGTGCCAAAGAAGTGTTGTTTCATCCATCTCCATCATCAGTGCTTGATGTTAGCACTACAAAAGCTCCACTAGATGTTAATGATGGTTCAGTCAAAGAAAAGGTCAACGTGGAAGCAAGTGGTGAAGGAAGAGGCAATAATGTGGAACCAGATTATAGTGAAGATGATTCAATTCAATATTTGCTAGAGGAGCCAGTTGTGCCATCATTGGTTGGTCATGATCTCTATTTGGATGAGGTGGAGAAAGGGGCAATGCTGCTTGGTAATGACTTTTATAATTTCTTGGACAATGACATCAAAGATGGTTCTATGTGGAATGTGAAACATGAGGAAGGCAACATCCTTTCCCCTGTAGACAGTGCTTTTGATGAGTTATCTTGGATCGATGAAACTCTAAATTGGGAATGCTACTAA 861 0.3995 MSTLRKIRVVYTDPDATDYSSEEDTKLLSNGYQLNSKRVVKEILFPCMPSKLHVENSSQEDVNSEKNNVSSGPFASRRSRKSSSMYKGVQRRKWGKYVAEIRDPIRGVRMWLGTFDSEEEAAMAYERKKNEFESSLLALSKRGALASSESAKEVLFHPSPSSVLDVSTTKAPLDVNDGSVKEKVNVEASGEGRGNNVEPDYSEDDSIQYLLEEPVVPSLVGHDLYLDEVEKGAMLLGNDFYNFLDNDIKDGSMWNVKHEEGNILSPVDSAFDELSWIDETLNWECY 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00220 286 SMART rav1_2 85 135 IPR001471 GO:0003700|GO:0006355
Cca08g00220 286 CDD AP2 86 127 IPR001471 GO:0003700|GO:0006355
Cca08g00220 286 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
Cca08g00220 286 SUPERFAMILY DNA-binding domain 84 132 IPR016177 GO:0003677
Cca08g00220 286 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Cca08g00220 286 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Cca08g00220 286 MobiDBLite consensus disorder prediction 55 87 - -
Cca08g00220 286 Gene3D AP2/ERF domain 85 136 IPR036955 GO:0003700|GO:0006355
Cca08g00220 286 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 285 - -
Cca08g00220 286 MobiDBLite consensus disorder prediction 55 83 - -
Cca08g00220 286 Pfam AP2 domain 86 133 IPR001471 GO:0003700|GO:0006355
Cca08g00220 286 PANTHER - 2 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00220 Cca-Chr8 3099785 3100645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00220 4 152 AP2-EREBP Transcription Factor Family AT1G68550 41.558 1.39e-23 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g00220 AP2 3.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00220 - - gmx:102661579 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00220 08 3099785 3100645 Cca08g00220 08 3099785 3100645 ECH