Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00218 ATGCCGGATGTTCAAACCCTTGTCAATGAATTTTTGAATCAGCTCAAAAAGCGTAAAATTGAAGGTTCTCAGGCCACAGCAAAGCAAACAGCAGAGCTGCTCCGGTCTGTGATTTCACAGCAGAGAGTGCCACACACAAACCAGACCACAGCTTTGATTAATGCAGTAAGAGCTGTGGGGGAGCAACTTATTGCTGCTAATCCAGTTGAGCTGGCTGTGGGAAATATCGTGAGACGTGTTTTGCACATTATAAGGGAAGAGGATCTTTCCCTTGCGACAGCTGCTATGGCTGGTTTGGGGGTTTCAGCTGCAAGTGATGATGAAGATGATGTGGAGCGAGGTGAAAATTCTGTTTTATCTGCTGCTGTTGTTGCAGCAGCTGCTCGAAGCACATTGCGTCCACCGTCATTGCAAACTCTTCTAGAGGATACCTCTGAATCAGCTGCTGCTCCCCATACATCTTCCTCCGGTGGGGAATCTGATGGGAGAAGTAGATCTGTTGAAAAAGGTTCAAAAAGTCGGAAATTGAAGCACGATGTCCTTGAAGCAGTCAATGAACTTATTCAAGACATATCTACTTGCTATGAACAAATAGCTGAGCAGGCAGTTGAGCACATTCATCACAATGAGGTAATATTAACGCTAGGCAGCTCAAACACAGTGTTGGAATTTCTTTATGCAGCAAAGGAAAAACAGAGATCATTTAAGGTCTTTGTTGCTGAAGGTGCCCCAAGATATCAGGGACATCTCCTTGCAAAAGAATTGGCTGCCAGAGGCTTACAGACCACAATAATTACTGACTCAGCTGTTTTTGCCATGATTTCCCGAGTGAACATGGTTATTGTTGGAGCTCATGCTGTAATGGCTAATGGTGGAGTTATTGCCCCGGTTGGGTTAAATATGGTTGCACTTGCAGCTCAAAGGCATGCTGTTCCATTTGTTGTACTTGCTGGGAGTCACAAGTTGTGCCCTTTGTATCCACACAATCCAGAAGTCCTACTGAATGAGCTGAGATCCCCATCTGAGCTACTTGACTTTGGAGAATTCTCAGATTGCATGGATTCTGCTAGTGGCACTGGTTCTCTTCATGTTGTCAATCCAACATTTGATTACGTGCCACCAAAACTTGTTAGTCTCTTTATTACAGACACAGGAGGGCATAACCCGTCATATGTGTACCGGCTCATAGCTGATTACTACTCAGCTGATGATTTGGTGGTGAAAAGAAGACCTACTACAGGGAGTTGA 1248 0.4471 MPDVQTLVNEFLNQLKKRKIEGSQATAKQTAELLRSVISQQRVPHTNQTTALINAVRAVGEQLIAANPVELAVGNIVRRVLHIIREEDLSLATAAMAGLGVSAASDDEDDVERGENSVLSAAVVAAAARSTLRPPSLQTLLEDTSESAAAPHTSSSGGESDGRSRSVEKGSKSRKLKHDVLEAVNELIQDISTCYEQIAEQAVEHIHHNEVILTLGSSNTVLEFLYAAKEKQRSFKVFVAEGAPRYQGHLLAKELAARGLQTTIITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVGLNMVALAAQRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCMDSASGTGSLHVVNPTFDYVPPKLVSLFITDTGGHNPSYVYRLIADYYSADDLVVKRRPTTGS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00218 415 Gene3D - 194 399 IPR042529 -
Cca08g00218 415 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 55 407 - -
Cca08g00218 415 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 9 54 - -
Cca08g00218 415 MobiDBLite consensus disorder prediction 143 173 - -
Cca08g00218 415 Pfam Initiation factor 2 subunit family 19 389 IPR000649 GO:0044237
Cca08g00218 415 MobiDBLite consensus disorder prediction 143 161 - -
Cca08g00218 415 PANTHER BNAA01G32370D PROTEIN 9 54 - -
Cca08g00218 415 PANTHER BNAA01G32370D PROTEIN 55 407 - -
Cca08g00218 415 SUPERFAMILY NagB/RpiA/CoA transferase-like 5 404 IPR037171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00218 Cca-Chr8 3086599 3092803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00218 1 407 Eukaryotic Initiation Factors Gene Family AT3G07300 80.685 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00218 K03754 - gmx:100778545 764.222