Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00186 ATGAATTTAGAAGACAAGTTCCTTGCTAAAGTTTCTGGAGTTCAAAGCCTTTCATCCAGTGCCCAAAGTACTCCAGAAAAAAATGGCCATTCAGATGATGCTTCAAGAAGTTCAGAACTTCTTCAGGAATTCCTAAAATCTGGTCCTAAGAAGGAACTTCTGCGATCTTGCTTTGACAAGGACAAAAAGAACATTTCTTCAAAAAGCAGGATGACCGAAACTAAGTCATCCAATAAGATTATCAAGAAGCAGGACTCAAAAAAAGTTTCTGTTCTCAGCAATCAACCTTCTAGGAAGCAACATCGCAAAGGAGAAAACCCGGTGCGGTTCGTACCAGCACCTGACCCACCTAGTGATTTTGGACATTCAAACTCCTGGATCTGTAAGAATTCTGCCTGTCGAGCAGTTCTCTCTAAAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGACGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATGTGAATCTGCTCAAGGGGACTCCTGTGGCTTGTCTTGTCATATTGAATGTGCTCTACAACAAGAAAAAGTAGGAGTTGTTGATCATGGACAATTGATGCAACTGGATGGTGGTTATTGTTGTGCTTCCTGTGGTAAAGTTACTGGGATACTTGGATGTTGGAAGAAGCAGCTAAATATAGCTAAAGATGCCCGGCGAGTAGATGTACTATGTTACAGGATATATTTGAGCTACAGGCTTTTGGATGGAACTTCGAGATTTAAAGAATTGCATGAAATGGTAAAAGAGGCAAAGGCTAAACTAGAAACTGAAGTTGGTCCAGTTAACGGGGTTTCTTCCAAGATGGCACGTGGCATTGTCAGCAGACTCCCTATTGCCAGTGATGTGCAGAAACTCTGCTCTCTTGCTATTGAAAAAGCTGATGAGTGGTTGGCCACTGTTCCCAATATAAATCCAGAATCCAGAGAGGGTTCACTTCCTGCAGCCTGCAAGTGTGTGTTTGAAGAGGTAACAGCTTCCTCAGTCAAAATCATTTTATTTGAAATTTCAAATGCATCTTCTGTAGACATTAAGGGATACAAGCTCTGGTATTATAAGAGCAGGGAGGAATCACACACTAAAGATCCTGTTTGTGTGTTTCCCAAAGCTCAGAGAAGGATTTTGATATCCAACCTTCAGCCTTGCACACAATATACGTTTCGAATCGTATCTTTTACGGATAAGGGTGACCTGGGTCATTCTGAGGCTAAGTGTTTCACCAAGAGCATTGAGATATTGGAAAAGAATTCATCTTCATCAGTTGCCATGAATCATAAAAAGGAGAACCTTCAAATTGAATGCAATTCTTCTGGCTCCAAAATGGAGCCCAATCCCACCTCGGCTGACTCTGGATTTAAGGTTCGAGACCTTGGCAAAATCCTGCATCTTACTTGGGCTCAAGAACAAGGTTGCTTTGAGGGGTTTTGCTGTGCTGGCAATAGAAATTGCTGTGGTCAAAGTGAAATGATCAAGCCTAGTAATCCACAAGAGCAGTTGCCTTTGGTTTCACGTGGTCTTGATCTAAATGTTGTTTCGGTGCCTGATTTAAATGAAGAACTTACGCCTCCATTTGAGTCTTCCAGGGACGAAGACAATGGTTGCACTTTGCAGCAGGCTGTTGAGGCAGATGATGATGCTGCTTCTCATGATTTGGAGAAAAACTTGGCAAGATCACACGGCAGTGGTGGTTCCCAAACATGGAACCATGGACCAACAGGAGAGGTTCCAGCTGTTGACTCGCGTGGAGATGCATGTAGGAAAAGGATGGCAAGCACAAATGAAGAGACACATGATTGTGACAGCACTTTGATAAATGGTTCTCCTTTGCGTGCATCTGATGGTCCATTCTCCTTAGATGAGAACTTTGAGTATTGTGTCAAAGTCATTCGTTGGCTAGAATGCCAGGGTCATATCAAGCAAGAATTTAGGCTGAAGTTGCTGACATGGTTTAGTTTGAGGTCGACCGAGCAAGAACGTAGGGTGGTAAATACTTTCATTCAAACTCTTATTGATGATCCAAGTAGCTTGGCAGGGCAACTAGTTGACTCATTTTCTGATATTATATCCAACAAGAGGCCAAGAAATGGTTTCTGCAATAAGGCTGTGTCATCAAGTTAA 2160 0.4231 MNLEDKFLAKVSGVQSLSSSAQSTPEKNGHSDDASRSSELLQEFLKSGPKKELLRSCFDKDKKNISSKSRMTETKSSNKIIKKQDSKKVSVLSNQPSRKQHRKGENPVRFVPAPDPPSDFGHSNSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTCESAQGDSCGLSCHIECALQQEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTSRFKELHEMVKEAKAKLETEVGPVNGVSSKMARGIVSRLPIASDVQKLCSLAIEKADEWLATVPNINPESREGSLPAACKCVFEEVTASSVKIILFEISNASSVDIKGYKLWYYKSREESHTKDPVCVFPKAQRRILISNLQPCTQYTFRIVSFTDKGDLGHSEAKCFTKSIEILEKNSSSSVAMNHKKENLQIECNSSGSKMEPNPTSADSGFKVRDLGKILHLTWAQEQGCFEGFCCAGNRNCCGQSEMIKPSNPQEQLPLVSRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDLEKNLARSHGSGGSQTWNHGPTGEVPAVDSRGDACRKRMASTNEETHDCDSTLINGSPLRASDGPFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCNKAVSSS 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00186 719 MobiDBLite consensus disorder prediction 12 28 - -
Cca08g00186 719 Pfam Fibronectin type III domain 336 413 IPR003961 GO:0005515
Cca08g00186 719 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Cca08g00186 719 Gene3D Immunoglobulins 322 424 IPR013783 -
Cca08g00186 719 PANTHER VIN3-LIKE PROTEIN 1 55 715 - -
Cca08g00186 719 MobiDBLite consensus disorder prediction 11 39 - -
Cca08g00186 719 CDD FN3 335 411 IPR003961 GO:0005515
Cca08g00186 719 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
Cca08g00186 719 MobiDBLite consensus disorder prediction 65 115 - -
Cca08g00186 719 MobiDBLite consensus disorder prediction 569 597 - -
Cca08g00186 719 MobiDBLite consensus disorder prediction 65 86 - -
Cca08g00186 719 SUPERFAMILY Fibronectin type III 332 411 IPR036116 GO:0005515
Cca08g00186 719 PANTHER VIN3-LIKE PROTEIN 2-RELATED 55 715 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00186 Cca-Chr8 2573834 2582489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00186 124 710 PHD Gene Family AT3G24440 48.922 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00186 - - gmx:100780157 1375.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00186 08 2573834 2582489 Cca08g00186 08 2573834 2582489 ECH
Cca09g02688 09 52509678 52521966 Cca08g00186 08 2573834 2582489 PCT